Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0487
(782 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical pr... 31 0.93
AF016668-7|AAB66091.3| 471|Caenorhabditis elegans Hypothetical ... 31 0.93
Z82060-2|CAB04882.1| 421|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 31 1.2
U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical pr... 30 2.1
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 29 2.8
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 29 2.8
Z83238-2|CAB05793.1| 343|Caenorhabditis elegans Hypothetical pr... 29 3.7
U61954-3|AAK29809.1| 863|Caenorhabditis elegans Hypothetical pr... 29 5.0
U61954-2|ABS19469.1| 957|Caenorhabditis elegans Hypothetical pr... 29 5.0
U61954-1|AAK29810.1| 955|Caenorhabditis elegans Hypothetical pr... 29 5.0
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr... 28 6.6
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 343 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 444
C+ +N+C L P+ GC PT CRNT C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306
>Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical
protein C30F2.1 protein.
Length = 307
Score = 31.1 bits (67), Expect = 0.93
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +1
Query: 367 CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 498
C P+RPK P G P CR PG R G NY + ++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149
>AF016668-7|AAB66091.3| 471|Caenorhabditis elegans Hypothetical
protein F36H9.1 protein.
Length = 471
Score = 31.1 bits (67), Expect = 0.93
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = -2
Query: 637 SQYCRSRGHQPGPNRRRICYQSRRDHDPCTVPC-SFLCWSQ*VRLVEVAVRYTAALNGSS 461
+++C + P ICY S+RD T C C+ + V + +++N +
Sbjct: 382 TEFCNREQNIEVPLGNVICYLSKRDQSERTKYCIGQKCYLFYEDINNVKEKGCSSVNDEA 441
Query: 460 PSEQINKNTLGYY---DTLLDNSTLL 392
P E+ LGYY D L N LL
Sbjct: 442 PEEEKRLGKLGYYTYCDENLCNGDLL 467
>Z82060-2|CAB04882.1| 421|Caenorhabditis elegans Hypothetical
protein T27F6.2 protein.
Length = 421
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/85 (27%), Positives = 31/85 (36%)
Frame = +1
Query: 391 PAGCYYPTRCRNTPGYFC*SARMGNYRSRRQCI*RQPPQVELIVTNKENCREQYKGHDRV 570
PAG ++ T C N PGY+ + G QC P V N NC D +
Sbjct: 266 PAGFWFSTNC-NNPGYYICKRQAG-----VQCSAAPPATVTPSPANPSNCNAGRLMSDGI 319
Query: 571 VTDNKFCAGLVRAGGRDYDNTDLGA 645
+T F Y + LG+
Sbjct: 320 ITSPNFPQNYFNNANCAYQISTLGS 344
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +1
Query: 343 CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 438
CE + NT C P+ K P C+ RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897
>U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical
protein F07E5.1 protein.
Length = 455
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 121 YSYPS*INGSNSALVLFSPTTTTFQLL 201
YSYPS I +S +V+ + TTTTF LL
Sbjct: 75 YSYPSPIVLEHSFVVMTTTTTTTFSLL 101
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 649 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 545
+GH RGH P P R R Y + HDPC V
Sbjct: 221 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 649 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 545
+GH RGH P P R R Y + HDPC V
Sbjct: 340 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373
>Z83238-2|CAB05793.1| 343|Caenorhabditis elegans Hypothetical
protein T08G3.2 protein.
Length = 343
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +3
Query: 102 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGLPVAVSPVK 281
S V + ++LP+LN F GI L + F + YRR + + ++P K
Sbjct: 266 SPVFLVIYLPLLNLDFSLPMGIFLGIFSLYPALDAFILMYVVTDYRRALKDVLKVLNPFK 325
Query: 282 YLMFTLLLTIPNSLRRI 332
+ + L+ IP + I
Sbjct: 326 KVTVSTLVVIPGQAQFI 342
>U61954-3|AAK29809.1| 863|Caenorhabditis elegans Hypothetical
protein F41H10.6a protein.
Length = 863
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 140 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYRWTSRRSEPGEI 283
S+V +R W C P + L W I+ + + +Y T+RR++ GEI
Sbjct: 355 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 404
>U61954-2|ABS19469.1| 957|Caenorhabditis elegans Hypothetical
protein F41H10.6c protein.
Length = 957
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 140 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYRWTSRRSEPGEI 283
S+V +R W C P + L W I+ + + +Y T+RR++ GEI
Sbjct: 357 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 406
>U61954-1|AAK29810.1| 955|Caenorhabditis elegans Hypothetical
protein F41H10.6b protein.
Length = 955
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 140 SMVPTVR--WYCSHQLPLPFNCYLFPWRILRSCIPSHYRWTSRRSEPGEI 283
S+V +R W C P + L W I+ + + +Y T+RR++ GEI
Sbjct: 355 SLVSVLRHHWNCFDYFPSRTSLRLAQWPIVNTKVIYNYDPTTRRADTGEI 404
>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein
T20F7.5 protein.
Length = 1065
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -1
Query: 212 METGSS*KVVVVGENNTSALLEPLIQDG*EYFNLDQAGMLANRHRSTEIASSAAADGSEH 33
+E SS V E+ +EP++++ +Y +LD M + RHRS +I S D H
Sbjct: 907 LERKSSSTVPEKNEDELRVEIEPIMKELSDYESLD---MRSIRHRSDKIDSYFDLDSEFH 963
Query: 32 SY 27
Y
Sbjct: 964 DY 965
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,337,135
Number of Sequences: 27780
Number of extensions: 456615
Number of successful extensions: 1214
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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