Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0484
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.1  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    27   1.9  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   1.9  
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy...    27   1.9  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    27   3.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.8  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   7.7  

>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 134 FTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHN 253
           ++GH         ++   NHF+ +GH    +T  +N+ +N
Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNSPNN 281


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 307 HSCLLISNPSSVWCLKSSVVLGVHEFRDDLSRMPGRIEV 191
           H CLL+  P   W L +     + + R+ ++ +PG I +
Sbjct: 261 HHCLLVLTPFQKWALSAPRTNILAQNREGIASLPGYIAI 299


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 95  EYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHS 214
           +YD++N DH  H    H     +  EA+         GHS
Sbjct: 21  DYDHHNHDHHGHDHHSHDSSSNSSSEAA-RLQFIQEHGHS 59


>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/79 (24%), Positives = 32/79 (40%)
 Frame = +2

Query: 125 KHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNRRLQTPNTRWIADQ*TT 304
           K + T +  K   KKE S  +      G ++      +  +   +L   N RWI +Q  T
Sbjct: 52  KSVTTNNSLKSEIKKEKSVPSIKEKNKGDAKHTKLTSLQQKMKDKLDGANFRWINEQLYT 111

Query: 305 MASRRTIELPNERRTLLRI 361
             S + +++  E   L  I
Sbjct: 112 TESDKAVQMFKENPDLFDI 130


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 110 NFDHDKHIFTGHGGKQRTKKEASEH--TNHFDPSGHSRKIVTKLMNAEHNRRLQT 268
           N + D +    H  K    ++ S H   +HFDPS + +K+V+ +   + NR+  +
Sbjct: 18  NEEDDDYYSNAHSEKS---EDHSNHIKVSHFDPSSYKQKLVS-VRETQRNRKFSS 68


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = -3

Query: 581  TQQFRLTS---PLFEIRHWNGVTSKIYHLLLGS 492
            T   R TS   PLF ++ WN +TS  +    GS
Sbjct: 2144 TDPLRATSDFIPLFSMQRWNSITSMFFAHASGS 2176


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -1

Query: 346 PPFVWQLNSPSASHSCLLISNPSSVWCLKSSVVLGVHEFRDDLSRMPGRIE 194
           P  V +L      H  +L+ NP+  +  + + +  ++   DDL    GR+E
Sbjct: 203 PNNVTELKIYILKHLPVLVFNPNKEFAREDAAITSIYYDNDDLDFYLGRLE 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,131
Number of Sequences: 5004
Number of extensions: 55282
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)