Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0484
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   1e-11
SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.023
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      30   1.5  
SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8)              29   4.6  
SB_21915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_29483| Best HMM Match : TerC (HMM E-Value=0.92)                     28   6.1  
SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)                 28   6.1  
SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)                28   8.0  

>SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 30/59 (50%), Positives = 40/59 (67%)
 Frame = +2

Query: 80  EAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNR 256
           E +FDEYDYYNFD  +++  G+  K R+K+EA  +TN F P GH RK++ K  N E NR
Sbjct: 2   EPYFDEYDYYNFD--RNVVEGNTRKGRSKREACLNTNRFCPGGHERKVLEKYRNTEKNR 58


>SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 92  DEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHS-RKIVTKLMNAEHNRR 259
           D+YD Y+FD   H   G   K ++KKEAS++ N     GHS RK    + + E  R+
Sbjct: 5   DKYDDYDFDERLH--EGGARKGKSKKEASQNKN-VSTQGHSERKAAEYIQHGEDKRK 58


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -2

Query: 321  VLLLAIVVY*SAIHLVFGV*S-LLLCSAFMSFVTIFLEC-PDGSKWLVCSDASFLVRCLP 148
            V +L I V+ S I L   V S ++L     S + + L C P  S  L CS +SFL+ C P
Sbjct: 1164 VTILFITVF-SVIILFITVFSVIILFITVFSIIILLLPCSPSSSFSLPCSPSSFLLPCSP 1222



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = -2

Query: 321  VLLLAIVVY*SAIHL---VFGV*SLLL-CSAFMSFVTIFLECPDGSKWLVCSDASFLVRC 154
            V++L I V+ S I L   VF +  LLL CS   SF    L C   S  L CS +SFL+ C
Sbjct: 1174 VIILFITVF-SVIILFITVFSIIILLLPCSPSSSFS---LPCSPSSFLLPCSPSSFLLPC 1229

Query: 153  LP 148
             P
Sbjct: 1230 SP 1231


>SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 68  VNMSEAFFDEYDYYNFDHDKHI 133
           V+  +AF+  +DYY F HD ++
Sbjct: 508 VSEGKAFYGSFDYYQFPHDSNL 529


>SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8)
          Length = 420

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 68  VNMSEAFFDEYDYYNFDHDKHI 133
           V+  +AF+  +DYY F HD ++
Sbjct: 66  VSEGKAFYGSFDYYQFPHDSNL 87


>SB_21915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 258 DFKHQTLDGLLINRQLWLAEGLLSCQTKGGRYCGYPRSVRVDARL 392
           +++ Q L G L   QLW+   + SC ++   +CG    + +   L
Sbjct: 53  EYRQQLLSGTLT--QLWVVASMRSCTSRYTGFCGVKEEINLQQAL 95


>SB_29483| Best HMM Match : TerC (HMM E-Value=0.92)
          Length = 586

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/21 (66%), Positives = 15/21 (71%)
 Frame = -3

Query: 527 VTSKIYHLLLGSFVALSRSKS 465
           VTS IY L LGSF+AL R  S
Sbjct: 256 VTSVIYALWLGSFLALGRQSS 276


>SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)
          Length = 512

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 305 MASRRTIELPNERRTLLRIPEEC 373
           + S RT  +PN  RTLL+IP  C
Sbjct: 461 LVSNRTDLIPNINRTLLKIPNYC 483


>SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
          Length = 1633

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +2

Query: 116  DHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNRRLQTPN 274
            ++ + I    GG    K  + + T  F P+  SRK   KL +++ ++ L  P+
Sbjct: 1294 ENSQTITRERGGDDNCKSSSLQRTEDFSPAQFSRKSPRKLTSSKGSQLLLRPS 1346


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,423,737
Number of Sequences: 59808
Number of extensions: 424857
Number of successful extensions: 1024
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)