Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0484
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26490.1 68417.m03812 expressed protein                             28   6.6  
At4g12820.1 68417.m02010 F-box family protein similar to F-box p...    28   6.6  
At3g23190.1 68416.m02924 lesion inducing protein-related similar...    27   8.7  

>At4g26490.1 68417.m03812 expressed protein 
          Length = 200

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +2

Query: 53  YQMPNVNMSEAFFDEYDYYNFDHDKHI-FTGHGGKQRTKKEASEHTNHFDPSGHSRKIVT 229
           + +PN N+   +FD  +++N D    + FT    K   K E       F     + ++V 
Sbjct: 53  FDIPNANLHTIYFDTPEFFNGDLSMLVNFTNPNKKIEVKFEKLRIELFFFNRLIAAQVVQ 112

Query: 230 KLMNAEHNRRLQ 265
             +  +H  RL+
Sbjct: 113 PFLQKKHETRLE 124


>At4g12820.1 68417.m02010 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 442

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 316 SASHSCLLISNPSSVWCL 263
           SAS SCL + NP+S W +
Sbjct: 96  SASESCLAVKNPTSPWII 113


>At3g23190.1 68416.m02924 lesion inducing protein-related similar to
           ORF, able to induce HR-like lesions [Nicotiana tabacum]
          Length = 216

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 98  YDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNRR 259
           YD+YN D+D+  FT    K    KE  E T   D  G +  + T ++N E  ++
Sbjct: 103 YDFYNRDYDRDHFTVFYTK---FKEFVEETTSAD-GGVAMSLYTSVVNEESRQK 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,058,109
Number of Sequences: 28952
Number of extensions: 288819
Number of successful extensions: 685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)