Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0483
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    26   3.4  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    26   3.4  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   5.9  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    25   5.9  
SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch...    25   5.9  

>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 328 EEDFALPYKFGDAKMHILDVYMQ 396
           E DF++   F D+  H+L +Y+Q
Sbjct: 191 ESDFSMALLFWDSGFHVLQLYLQ 213


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 302 ESSVRXRAAKRISLYRTNLGT-LKCIFWTFTCKYTKFLFF 418
           +S+++  +  R  +Y + + + +  +  TF C+YT+FL F
Sbjct: 326 DSNLKSTSRDRYLVYNSLIKSFVNTVLKTFRCRYTQFLIF 365


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 468 RELLIKKMGRTNFXCKRKNKN-FVYLHVNVQN 376
           R +L+  +GR  F CK K++  F+ + VN+++
Sbjct: 454 RVMLLTDVGRCAFVCKGKHERLFIEMEVNLKD 485


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 251 VDPRTRTALTRLPAGAVNLTLTTRELIVAARLTTKLRKSL-SLEVILPILKA 99
           VDP+T  ALT  P   V  + ++ +    +   +K +K L ++E   P+L+A
Sbjct: 529 VDPKTGKALTNNPVPPVETSSSSGQNFFGSFFGSKNKKRLAAMEPPPPVLRA 580


>SPCC1827.06c |||aspartate semialdehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 307 RFTKVKPTPPPVRRTLAN 254
           +F K  PTP  VR  LAN
Sbjct: 254 KFAKTSPTPDQVREVLAN 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,877,000
Number of Sequences: 5004
Number of extensions: 32441
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)