Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0483
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0234 - 1743784-1744017,1748103-1749068                           29   2.6  
06_03_0830 + 25159758-25162460                                         28   4.5  
03_02_0461 - 8658494-8658876,8659791-8659859,8661746-8662187           28   4.5  
11_02_0028 + 7517196-7517206,7517256-7517312,7517423-7517503,751...    28   6.0  
03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672     27   7.9  

>05_01_0234 - 1743784-1744017,1748103-1749068
          Length = 399

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -2

Query: 257 ECVDPRTRTA-LTRLPAGAVNLTLTTRELIVAARLTTKLRKSLSLEVILPILKALALSVD 81
           E  DP+   A  ++L    V + +  R+      L  +LRKSL + +I P L+  ALSV+
Sbjct: 193 EKTDPKANIASASQLRGLGVKIRMAKRDR--GGILDVRLRKSLEIRLIPPELEVPALSVE 250

Query: 80  LGSATSL 60
             +A  L
Sbjct: 251 EATAVLL 257


>06_03_0830 + 25159758-25162460
          Length = 900

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 273 CGGPXRMCRSSDADSPDASTGRRREPHVDNP-RVNCSST 160
           CG P    R SD  SPD    R+ EP +D P   N SST
Sbjct: 428 CGSPDINSRRSD--SPDLEARRQPEPPMDEPDNDNKSST 464


>03_02_0461 - 8658494-8658876,8659791-8659859,8661746-8662187
          Length = 297

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/30 (56%), Positives = 17/30 (56%)
 Frame = -1

Query: 291 SRRRLRCGGPXRMCRSSDADSPDASTGRRR 202
           SRRR R GG  R  R   ADS  AST  RR
Sbjct: 45  SRRRPRGGGCGRGARGRAADSGVASTTERR 74


>11_02_0028 +
           7517196-7517206,7517256-7517312,7517423-7517503,
           7518009-7518108,7518454-7518507,7519045-7519115,
           7519248-7519455,7519647-7519700,7519934-7520025,
           7520090-7520285,7521158-7521339,7521429-7521496,
           7522848-7522920,7523010-7523071,7523155-7524079,
           7524843-7525133,7525601-7525871
          Length = 931

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 446 IFLINNSRIYFEASLSFYSDCNYC 517
           I + NN+R+YF+A+   +S+  +C
Sbjct: 160 IAVTNNNRVYFQATTILFSNVGFC 183


>03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672
          Length = 242

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 321 RXRTEDSRK*SRRRLRCGGPXRMCRSSDA 235
           R R   SR+  RRR  CGG  R  R  DA
Sbjct: 176 RQRRRRSRRRRRRRRTCGGGGRCGRGGDA 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,853,439
Number of Sequences: 37544
Number of extensions: 204424
Number of successful extensions: 507
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)