Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0483
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          29   2.0  
SB_33542| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              29   3.5  
SB_54812| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   6.1  
SB_36010| Best HMM Match : Remorin_C (HMM E-Value=6.1)                 27   8.1  

>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 22/81 (27%), Positives = 31/81 (38%)
 Frame = -1

Query: 369  FSVPKFVR*SEILFAARXRTEDSRK*SRRRLRCGGPXRMCRSSDADSPDASTGRRREPHV 190
            FS P   + SEI  ++R     S +        G   ++CR S  D+P         P  
Sbjct: 927  FSTPSASQISEIPDSSRQEQRHSLQFCVAMSTLGSSQKICRMSMPDTPVIKMNIYAGPSA 986

Query: 189  DNPRVNCSSTAHNKAP*ESIT 127
             N R N S  +    P E +T
Sbjct: 987  QNNRGNASVASSGHLPEEIVT 1007


>SB_33542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1182

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 255  MCRSSDADSPDASTGRRREPHVDNPR 178
            + R + A SP   + R R PHVDN R
Sbjct: 1079 LIRRARARSPHVDSARARSPHVDNTR 1104


>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = +1

Query: 328 EEDFALPYKFGDAKMHILDVYMQIHE 405
           ++ F    ++ +A  H++D+Y+++HE
Sbjct: 464 DDQFLKSPEYSEASSHVMDIYLEVHE 489


>SB_54812| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 392

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 258 RMCRSSDADSPDASTGRRREPHVDNPRVNCSSTAHNK 148
           RM +S   D     TG+R +  VD+ R NCS    N+
Sbjct: 348 RMHKSVLNDRLAKKTGKRPDTEVDSKRSNCSHATFNR 384


>SB_36010| Best HMM Match : Remorin_C (HMM E-Value=6.1)
          Length = 183

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = -1

Query: 321 RXRTEDSRK*SRRRLRCGGPXRMCRSSDADSPDASTGRRREPHVDNPR 178
           R    D R  SR RL+     R  RS+  D   +S GRRR P    PR
Sbjct: 130 RLEMRDRRSASRDRLQM----RNRRSASRDRIPSSGGRRRSPSPSGPR 173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,024,162
Number of Sequences: 59808
Number of extensions: 242350
Number of successful extensions: 564
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)