Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0483
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    27   7.1  
AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
            protein C32E8.11 protein.
          Length = 1927

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -3

Query: 436  EFXLQTKKQKLRVFACKRPEYAF*RPQICTVKRNPLRGAXTN*RFTKVKPTPPPVRRTLA 257
            +F L      LRVF C+ P     RP++     +PL  A +   FT   P P  +  +  
Sbjct: 1543 QFLLHAVSDMLRVFLCEPP-----RPKLAQTPGSPLLSAPSTSSFT---PAPAQIPHSGT 1594

Query: 256  NVSIL 242
            N + L
Sbjct: 1595 NFAFL 1599


>AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical
           protein Y9C9A.8 protein.
          Length = 666

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 347 RTNLGTLKCIFWTFTCKYTKFLFFRLQXKFVLPIFLINNSRIYFEASLSFYS 502
           +  +GT+ C+    T     FLFF +   F  P+F IN  +  F  +  FYS
Sbjct: 165 KNTIGTI-CLGSIMTAIPMIFLFFPIGALFTAPVFGINMEKFSFLVTF-FYS 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,477,658
Number of Sequences: 27780
Number of extensions: 187335
Number of successful extensions: 452
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)