Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0483
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   2.8  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   6.5  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 399 TRSFCFFVCKXNSFSPFF 452
           T +FC   C  N  +PFF
Sbjct: 41  TNAFCLPFCGPNVINPFF 58


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 399 TRSFCFFVCKXNSFSPFF 452
           T +FC   C  N  +PFF
Sbjct: 40  TNAFCLPFCGPNVINPFF 57


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -2

Query: 251 VDPRTRTALTRLPAGAVNLTLTTRELIVAARLTTKLRKSLSLEVILPILKALALS 87
           V  +  + L R PAG+V+        +VA    T + K  ++     ILK +  S
Sbjct: 74  VHAQVYSCLARSPAGSVHSRDVNVRAVVAQYYDTDVNKEYAIRGNSAILKCVVPS 128


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 446 IFLINNSRIYFEASLSFYSDCNYCGNI 526
           I L NN+   FE +L+  +  NY G +
Sbjct: 111 IVLYNNADGNFEVTLATKATLNYTGRV 137


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 390 VNVQNMHFSVPKFVR*SEI 334
           +NV++M F V  FVR S I
Sbjct: 25  INVEDMDFRVDMFVRQSWI 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,894
Number of Sequences: 438
Number of extensions: 2258
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)