Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0482
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   6.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.0  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 16  MNMYLLYISII--FAFLVKIPIYFVHL*LPKAHVEAP 120
           +  ++L+  I+  F+  V + +  VH   P+ HV AP
Sbjct: 303 LGKFVLFTMILDTFSICVTVVVLNVHFRSPQTHVMAP 339


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 252 GLFIRIKCFCQVDIKSLIAYSSV 320
           G++ R+ C+ Q  +KS+ A + +
Sbjct: 210 GIYCRLYCYAQKHVKSIRAVTKL 232


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 544 TIAAPPSLNLLGEISL 591
           T++ PP+LNL+ +I L
Sbjct: 30  TLSTPPTLNLMEQILL 45


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 439 NINYERLHSRSLYINRGMINFIPL 510
           N NY   +++ LY N   I  IP+
Sbjct: 315 NNNYNNYNNKKLYYNINYIEQIPV 338


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -3

Query: 297 ILYQPDKNI 271
           IL+QPDKNI
Sbjct: 763 ILFQPDKNI 771


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -3

Query: 297 ILYQPDKNI 271
           IL+QPDKNI
Sbjct: 853 ILFQPDKNI 861


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,554
Number of Sequences: 438
Number of extensions: 1833
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)