Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0481
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    27   2.7  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    26   4.7  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       25   8.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.1  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.1  

>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 187 TAARFNNNWDIVVIIHGHSGTATRRSTLLLKTHF*QVAIITLSLWI 324
           T+++F + W+    I G  GT+     LLL      V ++ LS W+
Sbjct: 125 TSSKFADRWNNFQTIGGIIGTSVSMGLLLLLAIGNTVLLVRLSYWL 170


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 73  DAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAARFNNNWDIVVI 228
           DAI+ +E+    NK     +A  N+IT   D    G+D   +F  +WD +V+
Sbjct: 216 DAIEFMEKNVEKNK-----SAMSNNIT--SDILVWGHDIPRKFRRHWDYIVM 260


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 148 SNFSVHCYSNNIYLNFQIAP 89
           +NF+  C   N +LNFQI P
Sbjct: 417 NNFTSTCAFENSHLNFQITP 436


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -1

Query: 541 PITSRRV*TRNLATLPSKFLPVTPAT*APRLKPTMCT 431
           P+TS  V T N  T  S     TP T  P L  T CT
Sbjct: 521 PVTSTPVTTTNCTTSTSVLYTSTPVTSTP-LATTNCT 556


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 674 TAVDKEVNVSNSQRPSRF 621
           TA++  +N SNS++P RF
Sbjct: 438 TAIEHSINKSNSKQPPRF 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,757
Number of Sequences: 5004
Number of extensions: 65670
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)