Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0481
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533...    30   2.1  
03_05_0815 + 27917516-27917767,27918024-27918110,27918281-279183...    29   4.8  
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155...    28   6.4  
03_05_0773 + 27612237-27612330,27612426-27612523,27612605-276127...    28   6.4  

>05_03_0376 -
           13252220-13252354,13252433-13252541,13253279-13253337,
           13253608-13253700,13254078-13254153,13254405-13254467,
           13254535-13254629,13254743-13254845,13254930-13255024,
           13255098-13255156,13255445-13255656,13256090-13256222,
           13256691-13257081
          Length = 540

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 46  AFAFAACNGDAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFP 174
           A  F + +  ++++  R   L+K +  SNA+   I +TED FP
Sbjct: 216 AQGFDSQSSSSVKSSTRDEKLHKSFQISNAENEQILVTEDDFP 258


>03_05_0815 +
           27917516-27917767,27918024-27918110,27918281-27918394,
           27919644-27919835,27919925-27921677,27921771-27922708,
           27923587-27923859
          Length = 1202

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +1

Query: 82  QNLERFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTATRR 261
           QN + + + N   Y  N      T+   H  T    +AR+  N D++    G  GTA++ 
Sbjct: 765 QNTQFYSNYNVPSYPDNQFYQPATIHGYHLATSLKNSARYARNQDVI----GSQGTASQN 820

Query: 262 STL 270
           +T+
Sbjct: 821 TTM 823


>05_04_0226 +
           19215091-19215172,19215281-19215394,19215508-19215590,
           19215682-19215820,19215862-19216191,19216414-19216693,
           19216795-19216956,19217134-19217349,19217458-19217495,
           19217597-19217760,19217833-19217946,19218042-19218083,
           19218180-19218983
          Length = 855

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 249 SATVTVYYYDNIPIIVKARSSIVSSGKVVFGECNRISL 136
           S   T+   +NIP+++   SS   + K V G+  R+SL
Sbjct: 641 SKAPTIQNKENIPVMLNKGSSGADTSKAVAGKARRVSL 678


>03_05_0773 +
           27612237-27612330,27612426-27612523,27612605-27612781,
           27612869-27612969,27613079-27613154,27613255-27613314,
           27613412-27613596,27613669-27613807,27614229-27614315,
           27614939-27615127,27615243-27615461
          Length = 474

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 278 FNNRVDRRVAVPL*PCIITTISQLLLKRAAVSFP 177
           F+ R DR   +   PCI + +  LLL+R  V FP
Sbjct: 249 FSCRADRSGLIHGAPCIASIVFVLLLRRGRVRFP 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,673,539
Number of Sequences: 37544
Number of extensions: 416318
Number of successful extensions: 1061
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)