Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0481
         (715 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    26   1.0  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     26   1.4  
AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containi...    25   1.8  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    25   2.4  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    25   3.1  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    24   5.4  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +1

Query: 82  QNLERFGSLNKYYYY--SNAQRNSITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTAT 255
           QN+    +  K ++   S A  + I LTE        +A  FNNN+ +       SG+++
Sbjct: 85  QNVRGLRTKTKEFHLAVSEADFDLIALTETWLVDNIPSALLFNNNFSVYRCDRSLSGSSS 144

Query: 256 RRSTLLL 276
           R   +LL
Sbjct: 145 RGGGVLL 151


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 544 KQRTTTGNKRCSIR*SYSHRRIWCQQKRLGRWLLDTLTS 660
           K R+ T   RC +R +  H+R W +      +L + L S
Sbjct: 446 KNRSLTEMGRCMLRDAGMHKRFWAEAVNTACYLQNRLPS 484


>AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containing
            protein I protein.
          Length = 1340

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +1

Query: 79   IQNLE-RFG--SLNKYYYYSNAQRNSITLT 159
            IQN+E R+G  S+  YYY    +RN  T+T
Sbjct: 1258 IQNMEIRYGGTSVVLYYYKMGTERNCFTVT 1287


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 100 GSLNKYYYYSNAQRNSITLTEDHF 171
           GS + YYY  N  R  ITL + ++
Sbjct: 323 GSGHLYYYEENGDRRKITLNDVYY 346


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 261 INPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVM 365
           +NPI+      SGD+N    +W S S +    AV+
Sbjct: 112 VNPII-----ISGDFNAWATEWGSKSTNARGNAVL 141


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = -1

Query: 139 SVHCYSNNIYLNFQIAPSFEWHLRCKRQMQRPT 41
           S++ YSN++Y+ F +    +      R+ + P+
Sbjct: 196 SIYSYSNHVYIRFAVGELLQRPAADSRRQEGPS 228


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 792,106
Number of Sequences: 2352
Number of extensions: 16722
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 73177125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)