Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0481
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U88171-2|AAB42252.1|  434|Caenorhabditis elegans Glutamate-gated...    29   3.3  
U14525-1|AAA50786.1|  434|Caenorhabditis elegans avermectin-sens...    29   3.3  
AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.      29   3.3  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    28   5.8  
AJ512486-1|CAD54736.1|  559|Caenorhabditis elegans core alpha-6-...    28   7.6  
AF022968-8|AAN84870.1|  559|Caenorhabditis elegans Fucosyl trans...    28   7.6  

>Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical
           protein C26H9A.1 protein.
          Length = 966

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 611 QIRRCE*LQRIEHRLFPVVVRCFPNHEPKGLD 516
           Q+RRCE ++R    L   V+ C P  +PK +D
Sbjct: 98  QMRRCEEMERKLRFLEKQVITCKPGLDPKSID 129


>U88171-2|AAB42252.1|  434|Caenorhabditis elegans Glutamate-gated
           chloride channelprotein 2 protein.
          Length = 434

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +3

Query: 309 VIVVDWSSFSLSTYSTAVMAVTGVGSSIA-TFLK---NLKL-PLNKVHIVGFNLGAHVAG 473
           +++V W SF +  +STA     GV + +  T ++   N KL P++ V +V   LGA    
Sbjct: 259 IVIVSWVSFWIDLHSTAGRVALGVTTLLTMTTMQSAINAKLPPVSYVKVVDVWLGACQTF 318

Query: 474 VTGRNLE 494
           V G  LE
Sbjct: 319 VFGALLE 325


>U14525-1|AAA50786.1|  434|Caenorhabditis elegans
           avermectin-sensitive glutamate-gated chloride channel
           GluCl beta protein.
          Length = 434

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +3

Query: 309 VIVVDWSSFSLSTYSTAVMAVTGVGSSIA-TFLK---NLKL-PLNKVHIVGFNLGAHVAG 473
           +++V W SF +  +STA     GV + +  T ++   N KL P++ V +V   LGA    
Sbjct: 259 IVIVSWVSFWIDLHSTAGRVALGVTTLLTMTTMQSAINAKLPPVSYVKVVDVWLGACQTF 318

Query: 474 VTGRNLE 494
           V G  LE
Sbjct: 319 VFGALLE 325


>AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.
          Length = 966

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 611 QIRRCE*LQRIEHRLFPVVVRCFPNHEPKGLD 516
           Q+RRCE ++R    L   V+ C P  +PK +D
Sbjct: 98  QMRRCEEMERKLRFLEKQVITCKPGLDPKSID 129


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 363 MAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAG 473
           + +T   S + TF   LK+P   VHI+G + G    G
Sbjct: 10  LPMTAGASDVRTFFTGLKIPDGAVHIIGGDEGEVFVG 46


>AJ512486-1|CAD54736.1|  559|Caenorhabditis elegans core
           alpha-6-fucosyltransferase protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 94  RFGSLNKYYYYSNAQRNSITLTEDHFPTGN 183
           +F SL+  YY+   Q + + + EDH    N
Sbjct: 476 KFHSLDDIYYFGGQQAHEVIVIEDHIAQNN 505


>AF022968-8|AAN84870.1|  559|Caenorhabditis elegans Fucosyl
           transferase protein 8 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 94  RFGSLNKYYYYSNAQRNSITLTEDHFPTGN 183
           +F SL+  YY+   Q + + + EDH    N
Sbjct: 476 KFHSLDDIYYFGGQQAHEVIVIEDHIAQNN 505


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,181,388
Number of Sequences: 27780
Number of extensions: 377623
Number of successful extensions: 880
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)