Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0481
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.6  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 536 DWENNVLRLGTNDAQYVEVIH 598
           DW  N+ + G N  + +E+IH
Sbjct: 232 DWLFNLTKYGKNQIKLLEIIH 252


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
 Frame = -2

Query: 228 YYD-----NIPIIVKARSSIVSSGKVVFGEC 151
           YYD     N+   V   SSI SSG V  GEC
Sbjct: 143 YYDGGANLNLNGTVNCTSSIASSGVVSAGEC 173


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 288 LTSGDYNVIVVDWSSF 335
           + +GDY V+  +WSSF
Sbjct: 379 IQNGDYVVLETEWSSF 394


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 288 LTSGDYNVIVVDWSSF 335
           + +GDY V+  +WSSF
Sbjct: 85  IQNGDYVVLETEWSSF 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,238
Number of Sequences: 438
Number of extensions: 4762
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)