Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0481
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domai...    29   4.0  
At3g16260.1 68416.m02051 metallo-beta-lactamase family protein         28   7.1  
At1g32060.1 68414.m03944 phosphoribulokinase (PRK) / phosphopent...    28   7.1  
At1g20400.1 68414.m02544 myosin heavy chain-related                    27   9.3  

>At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 1009

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 264 NPIVKDAFLTSGDYNVIVVDWSSFSL 341
           NP + DAF+ +GDY+ +VV    F L
Sbjct: 901 NPRIHDAFMGAGDYSGLVVPDGKFGL 926


>At3g16260.1 68416.m02051 metallo-beta-lactamase family protein 
          Length = 937

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
 Frame = +3

Query: 219 CRNNTRSQWHCYTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIAT 398
           CRN T + W    T  P   +   +SG+    +    S   S Y      +T   SS   
Sbjct: 691 CRNTTTTSWASVETSRP---EKNTSSGNAEGSLFSKGSLMQSIYKRPSSPLTD-NSSALP 746

Query: 399 FLKNLKLPLNKV---HIVGF 449
           FLK LK  L ++   H++ F
Sbjct: 747 FLKKLKKVLGEMGLEHLISF 766


>At1g32060.1 68414.m03944 phosphoribulokinase (PRK) /
           phosphopentokinase nearly identical to SP|P25697
           Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)
           (Phosphopentokinase) (PRKASE) (PRK) {Arabidopsis
           thaliana}
          Length = 395

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 485 KFGRQSSKITGLDPSARDWE 544
           ++GR+  K+T LDP A D++
Sbjct: 109 RYGRKEQKVTALDPRANDFD 128


>At1g20400.1 68414.m02544 myosin heavy chain-related
          Length = 944

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 85  NLERFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAAR 198
           N E  GS +  Y          +  +DH P+G D AAR
Sbjct: 517 NTEEVGSYSSRYKRQKTSALKESQEKDHLPSGEDRAAR 554


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,966,455
Number of Sequences: 28952
Number of extensions: 340231
Number of successful extensions: 749
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)