Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0433
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    28   0.97 
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   1.7  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    27   1.7  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    27   2.3  
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub...    27   3.0  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    26   3.9  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   6.9  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    25   9.1  

>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +2

Query: 170 KWQL*RYRCGLVIIQSINIFNGSDGCDRLGSSIATFLKNLKLPLNKVHIVGFNLGAHVAG 349
           +W L   + G +I    N  N  D     G  +A  L    L +  V +VG++LGA V  
Sbjct: 526 QWPLILTKLGYLIDNPWN--NSLDRAKATGQLLADMLCYRSLGVRPVTLVGYSLGARVIY 583

Query: 350 VTGRNLEGK 376
              R LE K
Sbjct: 584 YCLRELEKK 592


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 382 KNYGSRPFGS*LGKQRTTTGNKRCSITLKLF 474
           +NY   PF    G+QRT+ GN R ++ L +F
Sbjct: 52  ENYPQLPFVLATGRQRTSVGNIREALGLHVF 82


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 275 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 406
           F+K+ KL  +K  I+G ++GA  A VT      KV ++  +D S
Sbjct: 80  FMKDHKL--DKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNS 121


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +3

Query: 87  WDIVVIIHGHSGTATTTINPIVKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGWDQV 266
           +  V++I G  G + T   PI++D  L+  N   I   WS  SLS    A  ++      
Sbjct: 414 YSYVLLIAGGVGFSYTL--PILRDLILKECNVTSITFIWSCRSLSLLKVASKSLNSLLHQ 471

Query: 267 SLLF*KISNY 296
           S +  KI N+
Sbjct: 472 SNVRLKIINH 481


>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
           subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 497 QKRLGIAIGHIDFFVNGRLVQPGCTNNLCSHNRAY 601
           QK +   +G  + F + +  +  C N  C +NRAY
Sbjct: 46  QKEVDDVLGGEEAFESNQQTEVTCENTKCDNNRAY 80


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 453 ASFVPSRSTLFSQSRAEGSRPVILATLPSK 364
           + F      +FS    EGSRPV LA L S+
Sbjct: 461 SGFSVREEAVFSSPTTEGSRPVSLARLKSE 490


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 276 KVAILDPNLSQPSLPLNML 220
           K+ I D NLS PS+PL +L
Sbjct: 13  KLWIKDKNLSNPSIPLKVL 31


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 395 LDPSARDWENNVLRLGTNDAQLR*SYSHRRIWCQQKRLGIAIGHID 532
           +D S   W+  +  +G N  QL   Y   +    Q+   + IGH D
Sbjct: 126 IDFSPELWQKALQHVGNNPEQLFIDYFEHQYDLMQRLHPLVIGHFD 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,621
Number of Sequences: 5004
Number of extensions: 51675
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)