Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0433
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    29   3.1  
10_07_0062 - 12499872-12501350                                         29   3.1  
06_02_0346 - 14837982-14838122,14838208-14838327,14838411-148385...    29   4.1  
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664...    28   7.1  
06_03_0117 + 16826133-16826600,16826650-16827201,16827310-168274...    28   7.1  

>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 266 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 385
           IA +LKN KL ++++ +    L   +A +    + GK+ +
Sbjct: 416 IAAYLKNEKLSIDEIKLTPLELSELIASIRNGTISGKIGK 455


>10_07_0062 - 12499872-12501350
          Length = 492

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 245 CDRLGSSIATFLKNLKLPLNKVHIVGFNLGAH 340
           CDR G+ +A+F  + +LP+N +H +  NL  H
Sbjct: 456 CDRKGNVLASFQFDGQLPMNCLHRLKENLVVH 487


>06_02_0346 -
           14837982-14838122,14838208-14838327,14838411-14838564,
           14838793-14838866,14838962-14839095,14839207-14839326,
           14843174-14843308,14843842-14843976,14844343-14845003,
           14845103-14845264,14845348-14845510,14880834-14881021
          Length = 728

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +3

Query: 9   EKRDPITLTEDHFPTGNDPAAPFNNNWDIVVIIHGHSGTATTTINPIVKDAFLRSGNYNV 188
           +++DP ++T D F        P+     + V + G S T   TI    KDA++ S    V
Sbjct: 17  DRKDPKSMTIDIFENKKIVITPWKVKIVLGVPLGGDSFTGGETIFGRPKDAWIGSDLQKV 76

Query: 189 IVVDWS 206
             ++WS
Sbjct: 77  ARINWS 82


>09_06_0328 +
           22365308-22365415,22365743-22366018,22366166-22366417,
           22366542-22366939,22367028-22368021,22368199-22368409,
           22368515-22368749,22368874-22368996,22369190-22369310,
           22369416-22369625
          Length = 975

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = +3

Query: 72  PFNNNWDIVVIIHGHSGTATTTINPIVKDAFLRSGNYNVIVVDWSSFS------LSTYST 233
           P   NW +V+ + GH+      +N    D+ L SG+ +  V  WS  +      L  +S+
Sbjct: 110 PDVENWKVVMTLRGHTAD-VVDLNWSPDDSTLASGSLDNTVHIWSMANGICTAVLRGHSS 168

Query: 234 AVMAVTGWDQV 266
            V  VT WD +
Sbjct: 169 LVKGVT-WDPI 178


>06_03_0117 +
           16826133-16826600,16826650-16827201,16827310-16827453,
           16827543-16827959
          Length = 526

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 482 VGVNNFNVIEHRLFPVVVRCFPNHE 408
           + V  FN  E ++ P+ +RCFPN E
Sbjct: 359 IQVKLFNHNEVKMLPIFLRCFPNVE 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,556,737
Number of Sequences: 37544
Number of extensions: 325871
Number of successful extensions: 909
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)