Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0433
(632 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f... 31 0.48
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f... 30 1.1
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f... 30 1.1
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ... 30 1.5
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ... 30 1.5
At4g36290.1 68417.m05160 ATP-binding region, ATPase-like domain-... 29 2.6
At3g17860.1 68416.m02276 expressed protein 29 3.4
At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)... 28 4.5
At1g48090.2 68414.m05363 C2 domain-containing protein contains P... 28 5.9
At1g48090.1 68414.m05362 C2 domain-containing protein contains P... 28 5.9
At5g19620.1 68418.m02335 outer membrane OMP85 family protein wea... 27 7.8
At1g68900.1 68414.m07885 mandelate racemase/muconate lactonizing... 27 7.8
>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 475
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 260 SSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITG 394
S IA +LKN KL +N + + L +A + + GK+ + G
Sbjct: 420 SDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGKEVG 464
>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 488
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 260 SSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 385
S IA +LKN KL +N + + L +A + + GK+ +
Sbjct: 420 SDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGK 461
>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 550
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 260 SSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 385
S IA +LKN KL +N + + L +A + + GK+ +
Sbjct: 420 SDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGK 461
>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +2
Query: 101 NNTRSQWHCYDDDQPYC*RRVFKKWQ---L*RYRC 196
NNTRS+ C+ D+ C +V KWQ YRC
Sbjct: 614 NNTRSRPFCHHHDEDRCPYKVIFKWQDMTFCSYRC 648
>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 661
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 101 NNTRSQWHCYDDDQPYC*RRVFKKWQ 178
NNTRS+ C+ D+ C +V KWQ
Sbjct: 622 NNTRSRPFCHHHDEDRCPHKVVFKWQ 647
>At4g36290.1 68417.m05160 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Mus musculus] GI:5410255; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 635
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +2
Query: 206 IIQSINIFNGSDGCDRLGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVA 382
II+ IN+ N + R + A L+N N V N AG TG NL GK+A
Sbjct: 520 IIREINLSNATSS--RTAAVAAPHLRNYTGLRNNFQPVQLNPQPPAAGDTGNNLVGKLA 576
>At3g17860.1 68416.m02276 expressed protein
Length = 352
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +3
Query: 12 KRDPITLTEDHFPTGNDPAAPFNNNWDIVVIIHGHSGTATTTINPIVKDAFLRSGNYNV 188
K PIT+ E+ + D A NW + S + + P +D +SGNY++
Sbjct: 11 KNSPITVKEETSESSRDSAPNRGMNWSFSNKVSA-SSSQFLSFRPTQEDRHRKSGNYHL 68
>At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)
(FAS1) identical to FAS1 [Arabidopsis thaliana]
GI:4887626
Length = 815
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 221 NIFNGSDGCDRLGSSIATFLKNLKLPLNKV 310
++F+G C L S +A ++ + LPL+K+
Sbjct: 69 DLFSGFSECSSLNSMVALLMEEMSLPLSKL 98
>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 3427
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 254 LGSSIATFLKNLKLPLNKVHI 316
LGS IAT + NLK+ ++ VHI
Sbjct: 171 LGSIIATIIGNLKVSISNVHI 191
>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 4144
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 254 LGSSIATFLKNLKLPLNKVHI 316
LGS IAT + NLK+ ++ VHI
Sbjct: 171 LGSIIATIIGNLKVSISNVHI 191
>At5g19620.1 68418.m02335 outer membrane OMP85 family protein weak
similarity to chloroplastic outer envelope membrane
protein (OEP75) [Pisum sativum] GI:633607; contains Pfam
profile PF01103: outer membrane protein, OMP85 family
Length = 732
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 18 DPITLTEDHFPTGNDPAAPFNNNWDIVV-IIHGHSGTATTTINPIVKDAF 164
D +LT G + + PF W+ +I H+G NPI+KD +
Sbjct: 488 DNSSLTIGRVTAGVEYSRPFRPKWNGTAGLIFQHAGARDEQGNPIIKDFY 537
>At1g68900.1 68414.m07885 mandelate racemase/muconate lactonizing
enzyme C-terminal domain-containing protein / hydrolase,
alpha/beta fold family protein contains Pfam profiles
PF01188: Mandelate racemase / muconate lactonizing
enzyme, C-terminal domain, PF00561: hydrolase,
alpha/beta fold family
Length = 656
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 305 KVHIVGFNLGAHVAGVTGRNLEGKV--ARITGLDPSARDWENNVLRLGTNDAQLR 463
KV IVG+++GA +A K+ A + P +D +R T+D++ R
Sbjct: 455 KVTIVGYSMGARIALYMALRFSNKIEGAVVVSGSPGLKDPVARKIRSATDDSKAR 509
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,488,747
Number of Sequences: 28952
Number of extensions: 267433
Number of successful extensions: 650
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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