Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0432
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 162 5e-41
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 161 6e-41
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 161 6e-41
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 97 3e-21
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 93 3e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 73 4e-14
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 38 0.002
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 37 0.002
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.007
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.007
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.016
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.029
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 33 0.050
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.20
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.27
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.47
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 28 1.1
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 2.5
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.3
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 4.4
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 5.8
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 26 5.8
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 5.8
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 7.6
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 7.6
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 162 bits (393), Expect = 5e-41
Identities = 75/85 (88%), Positives = 80/85 (94%)
Frame = +3
Query: 255 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 434
DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQT
Sbjct: 74 DIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQT 133
Query: 435 REHALLAFTLGVKQLIVGVNKMDST 509
REHALLA+TLGVKQLIV VNKMD+T
Sbjct: 134 REHALLAYTLGVKQLIVAVNKMDTT 158
Score = 149 bits (362), Expect = 3e-37
Identities = 68/73 (93%), Positives = 71/73 (97%)
Frame = +1
Query: 37 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 216
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 217 DKLKAERERGITM 255
DKLKAERERGIT+
Sbjct: 61 DKLKAERERGITI 73
Score = 87.4 bits (207), Expect = 2e-18
Identities = 33/53 (62%), Positives = 45/53 (84%)
Frame = +2
Query: 518 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGW 676
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGW 212
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 161 bits (392), Expect = 6e-41
Identities = 74/85 (87%), Positives = 80/85 (94%)
Frame = +3
Query: 255 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 434
DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQT
Sbjct: 74 DIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQT 133
Query: 435 REHALLAFTLGVKQLIVGVNKMDST 509
REHALLA+TLGVKQLIV VNKMD+T
Sbjct: 134 REHALLAYTLGVKQLIVAVNKMDTT 158
Score = 149 bits (362), Expect = 3e-37
Identities = 68/73 (93%), Positives = 71/73 (97%)
Frame = +1
Query: 37 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 216
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 217 DKLKAERERGITM 255
DKLKAERERGIT+
Sbjct: 61 DKLKAERERGITI 73
Score = 87.4 bits (207), Expect = 2e-18
Identities = 33/53 (62%), Positives = 45/53 (84%)
Frame = +2
Query: 518 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGW 676
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGW 212
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 161 bits (392), Expect = 6e-41
Identities = 74/85 (87%), Positives = 80/85 (94%)
Frame = +3
Query: 255 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 434
DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQT
Sbjct: 74 DIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQT 133
Query: 435 REHALLAFTLGVKQLIVGVNKMDST 509
REHALLA+TLGVKQLIV VNKMD+T
Sbjct: 134 REHALLAYTLGVKQLIVAVNKMDTT 158
Score = 149 bits (362), Expect = 3e-37
Identities = 68/73 (93%), Positives = 71/73 (97%)
Frame = +1
Query: 37 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 216
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 217 DKLKAERERGITM 255
DKLKAERERGIT+
Sbjct: 61 DKLKAERERGITI 73
Score = 87.4 bits (207), Expect = 2e-18
Identities = 33/53 (62%), Positives = 45/53 (84%)
Frame = +2
Query: 518 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGW 676
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGW 212
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 96.7 bits (230), Expect = 3e-21
Identities = 42/77 (54%), Positives = 56/77 (72%)
Frame = +3
Query: 273 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 452
FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+L
Sbjct: 311 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL 370
Query: 453 AFTLGVKQLIVGVNKMD 503
A T G+ L+V +NKMD
Sbjct: 371 ARTQGINHLVVVINKMD 387
Score = 85.0 bits (201), Expect = 9e-18
Identities = 37/69 (53%), Positives = 51/69 (73%)
Frame = +1
Query: 49 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 228
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 229 AERERGITM 255
ERE+G T+
Sbjct: 296 EEREKGKTV 304
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 93.1 bits (221), Expect = 3e-20
Identities = 44/83 (53%), Positives = 54/83 (65%)
Frame = +3
Query: 255 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 434
D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NGQT
Sbjct: 244 DVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQT 303
Query: 435 REHALLAFTLGVKQLIVGVNKMD 503
REHA L LG+ +++V VNK+D
Sbjct: 304 REHAYLLRALGISEIVVSVNKLD 326
Score = 82.2 bits (194), Expect = 6e-17
Identities = 36/73 (49%), Positives = 51/73 (69%)
Frame = +1
Query: 49 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 228
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 229 AERERGITMILLS 267
ER RG+TM + S
Sbjct: 235 EERARGVTMDVAS 247
Score = 45.2 bits (102), Expect = 9e-06
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +2
Query: 518 YSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKG 673
+SE RF+EIK VS + IK +G+ + V FVPIS G N++ + S W+KG
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG 384
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 72.9 bits (171), Expect = 4e-14
Identities = 35/78 (44%), Positives = 52/78 (66%)
Frame = +3
Query: 270 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 449
++ET+ + +D PGH D+IKNMITG + D A+++V+A G+ QTREH L
Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLL 162
Query: 450 LAFTLGVKQLIVGVNKMD 503
LA +GVKQ++V +NK+D
Sbjct: 163 LARQVGVKQIVVYINKVD 180
Score = 38.7 bits (86), Expect = 8e-04
Identities = 26/71 (36%), Positives = 36/71 (50%)
Frame = +1
Query: 43 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 222
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 223 LKAERERGITM 255
E+ RGIT+
Sbjct: 94 APEEKARGITI 104
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 37.5 bits (83), Expect = 0.002
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Frame = -2
Query: 428 TVLRDTSFEFTGTGSYDEHSAISLRGSCDHVL--DEIS--VSRSINDGNIVLASFELPES 261
+V+ +T T ++ + +SL SC L DE S SRS N + ++
Sbjct: 109 SVMNETDSSSTSVEDVNKENILSLNDSCLIKLSDDEASNKSSRSSTPRNSIKSNSSNQGH 168
Query: 260 NIIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 126
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 169 GDIPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 291 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 470
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 471 KQLIVGVNKMD 503
K +I+ NK+D
Sbjct: 163 KHIIILQNKVD 173
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 37 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 132
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 288 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 383
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 37 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 132
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 288 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 383
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.016
Identities = 22/65 (33%), Positives = 35/65 (53%)
Frame = +1
Query: 61 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 240
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 241 RGITM 255
+GIT+
Sbjct: 111 KGITI 115
Score = 34.3 bits (75), Expect = 0.016
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +3
Query: 273 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 443
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.029
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 273 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 398
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 32.7 bits (71), Expect = 0.050
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +1
Query: 61 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 240
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGD----TVMDYLPAERQ 76
Query: 241 RGITM 255
RGIT+
Sbjct: 77 RGITI 81
Score = 29.1 bits (62), Expect = 0.62
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +3
Query: 294 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 473
+ +ID PGH DF + + D AV I+ + AG+ QT+ A G+
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTKVVWKQATKRGIP 147
Query: 474 QLIVGVNKMD 503
++I VNKMD
Sbjct: 148 KVIF-VNKMD 156
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 264 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 398
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +1
Query: 61 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 240
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 241 RGITM 255
RGIT+
Sbjct: 104 RGITV 108
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.27
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 288 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 398
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.47
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 300 IIDAPGHRDFIKNMITGTSQADCAVLIV 383
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = -2
Query: 377 EHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIIVIPRSRSAFSLSNTQAYL 198
EH+A+ L S +L IS R N GNI L S + ++ S + L+ + A
Sbjct: 5 EHAALPLASS-PSILGPISGGR--NRGNIQLQSIPIEFQAVVFAGFGNSLYPLTGSDALP 61
Query: 197 KDPLPI 180
K LPI
Sbjct: 62 KALLPI 67
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +3
Query: 507 TNHHTVSPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRD 674
TN T +PD+ ++PHT +R +T + L LSC + +E + P G +D
Sbjct: 142 TNSST-NPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQD 199
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 303 IDAPGHRDFIKNMITGTSQADCAVLIV 383
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 252 NDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 389
ND ++K + + + + PGH D I+++ S LI A
Sbjct: 192 NDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPSMGSSYYLIATA 237
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 5.8
Identities = 26/79 (32%), Positives = 35/79 (44%)
Frame = +3
Query: 381 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTNHHTVSPDLRKSRRKYP 560
VA GT E GI NG E+A+ A +I V++ +H + KSRR+YP
Sbjct: 47 VAEGTAE---GIVSNG---EYAVGAMGAAPTNIIGSVDQQPPVSHTS-----HKSRRQYP 95
Query: 561 HTSRRLATTQLLSLSCPFL 617
L T S + P L
Sbjct: 96 AEVFELTNTLAASPAPPSL 114
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 341 HVLDEISVSRSINDGNIVLASFELPESNIIVIPRSRSAFS 222
+ +D+ SV R +N + + ELPE + + R AFS
Sbjct: 607 YTIDDDSVERIMNCIRAIYSFEELPEFQTVFLDDMRKAFS 646
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 244 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWY 146
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -2
Query: 311 SINDGNIVLASFELPESNIIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 132
S++ + L S+ P S + A ++YL+ PL S S S + +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 223 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 95
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,870,361
Number of Sequences: 5004
Number of extensions: 60213
Number of successful extensions: 243
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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