Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0431
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   3.8  
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    26   6.7  

>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 298  NSHAVFAHLHSVTKY*SMFT*EYDHLYNKLMTHKVP*LVKDYIQQGIM 155
            N+    AH  S  +Y    T  Y+H+  K  +H++  + +D I+QG +
Sbjct: 1060 NTQRKIAHFESRRRY---LTNLYEHIVLKAESHQICIICRDIIKQGFI 1104


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 302 CGALLFDAVFLYHSFVLVSETEMLWYNVKINVTLRNISGKCYF 430
           CG   F    +   FVL   T +  +NV +N   ++ SGK  F
Sbjct: 132 CGFQTFLDTVILSLFVLCGLTRLARFNVSVNSIPKDGSGKSQF 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,651
Number of Sequences: 5004
Number of extensions: 47968
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)