Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0431
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767...    29   5.3  
01_01_0995 + 7875273-7875495,7876196-7876274,7876422-7876536,787...    28   7.0  
07_03_0871 - 22183149-22183232,22183706-22183964,22184012-221840...    28   9.3  

>04_03_0554 -
           17075142-17075159,17075788-17076591,17076619-17076719,
           17077095-17077751,17077827-17078768,17078837-17078896,
           17079131-17079763,17079886-17079942,17080177-17080702
          Length = 1265

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 591 KNVEHAEKSVLYYIKSLSINIEWEGRRS 674
           KNV H E+  L Y ++ S  I W+ R S
Sbjct: 120 KNVAHEERQALVYRQNESFTIRWDTRTS 147


>01_01_0995 +
           7875273-7875495,7876196-7876274,7876422-7876536,
           7878507-7878761
          Length = 223

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 522 ACCVVVISDFRPVPTVIIEIDGIKNVEHAEKSVLYYIKSLSINIEWEGRRSK 677
           AC +  I   R +P V IE+D +    + EK +     +  ++ +WE +R +
Sbjct: 135 ACAIADIDTIRLIP-VHIEMDDVLAWHYDEKGLFLVKSAYKVHRDWERQRQR 185


>07_03_0871 -
           22183149-22183232,22183706-22183964,22184012-22184091,
           22184308-22184667,22184757-22184900,22184986-22185141,
           22185236-22185401,22185480-22185512,22186188-22186270,
           22186341-22186443,22186540-22186628
          Length = 518

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 335 YHSFVLVSETEMLWYNVKINVTLRNISGKCYFLILLTS 448
           Y  FVL +     ++  K+N  LRN++G  Y L  L+S
Sbjct: 170 YQPFVLRTTAIFTYHEAKVNTRLRNLAG--YTLFFLSS 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,503,089
Number of Sequences: 37544
Number of extensions: 258286
Number of successful extensions: 445
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)