Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0431
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087082-1|AAG37982.2|  157|Caenorhabditis elegans Hypothetical ...    30   2.1  
U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of l...    29   4.7  
Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>AC087082-1|AAG37982.2|  157|Caenorhabditis elegans Hypothetical
           protein Y92H12BM.1 protein.
          Length = 157

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -3

Query: 374 ITFQSHSPTQMNDIKILHQTIRLRNQLSRC-VRTFAQRHKILINVHLRIR 228
           +TF+S+S    N +  L  +  +R + S C  R +A R+++  + H ++R
Sbjct: 99  VTFRSNSQNSQNTLNGLQSSFEMRKRGSTCHFREYAARNELPQSAHYQLR 148


>U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform c protein.
          Length = 523

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 534 VVISDFRPVPTVIIEIDGIKNVEHAEKSVLYYIKSLSINIEWEGRRSKITIAHIE 698
           V+I  F+P P   +EI+  KNV  AEK ++  +  +      +   S + I  +E
Sbjct: 423 VIIDRFKPTP---VEIEKAKNVAAAEKKLISLVPDVPPRTSSQTSSSYVNIKELE 474


>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical
           protein F10F2.2 protein.
          Length = 1343

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 570 IIEIDGIKNVEHAEKSVLYYIK-SLSINIEWEGRRSKITIAHIEPDI 707
           I E  GIKNVE  E+ + Y ++  + +N  +E    K+T A    D+
Sbjct: 104 IFESSGIKNVERIERGIRYLVEDDVDVNEFFEIAADKMTEAIYGNDV 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,533,268
Number of Sequences: 27780
Number of extensions: 270641
Number of successful extensions: 553
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)