Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0430
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    86   5e-18
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    85   1e-17
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    84   2e-17
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   2.6  

>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 85.8 bits (203), Expect = 5e-18
 Identities = 37/62 (59%), Positives = 51/62 (82%)
 Frame = +1

Query: 508 SWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEK 687
           ++G PN K+VREL+YKRGF K++ QRIP++ N+I+E  L K++I+ VEDLIHEI+TVG  
Sbjct: 142 TYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPN 201

Query: 688 FK 693
           FK
Sbjct: 202 FK 203



 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 32/56 (57%), Positives = 39/56 (69%)
 Frame = +3

Query: 258 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 425
           Y  EYR  ER++I LAR+AR  GNY+VP E KL FV+RIRGIN + PK+ K    L
Sbjct: 58  YEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113



 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 22/42 (52%), Positives = 30/42 (71%)
 Frame = +2

Query: 398 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYILGDTP 523
           + RK++QL RL QINNG+FV+ NKA   ML++ EPY+    P
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIP 146


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 34/61 (55%), Positives = 50/61 (81%)
 Frame = +1

Query: 511 WGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKF 690
           +G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI+ VG  F
Sbjct: 142 YGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHF 201

Query: 691 K 693
           K
Sbjct: 202 K 202



 Score = 58.4 bits (135), Expect = 9e-10
 Identities = 26/56 (46%), Positives = 36/56 (64%)
 Frame = +3

Query: 258 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 425
           ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK  K    L
Sbjct: 57  FINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112



 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 25/42 (59%), Positives = 31/42 (73%)
 Frame = +2

Query: 398 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYILGDTP 523
           ++RKVL+L RL +INN VFVR NKA   MLRI EPY++   P
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIP 145


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 36/62 (58%), Positives = 51/62 (82%)
 Frame = +1

Query: 508 SWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEK 687
           ++G PNLK+VREL+YKRGF K++ QRI ++ N+I+E  L K++I+ +EDLIHEI+TVG  
Sbjct: 143 TYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPN 202

Query: 688 FK 693
           FK
Sbjct: 203 FK 204



 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 33/56 (58%), Positives = 38/56 (67%)
 Frame = +3

Query: 258 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 425
           Y  EYR  ER++I L R+AR  GNYYVP E KL FVIRIRGIN + PK+ K    L
Sbjct: 59  YDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114



 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 24/42 (57%), Positives = 31/42 (73%)
 Frame = +2

Query: 398 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYILGDTP 523
           + RK++QL RL QINNGVFV+ NKAT  ML++ EPY+    P
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIP 147


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -3

Query: 696 VLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFVY*LTDTL*VGV 517
           +L +F+  +D M   L T+N +    +L +A    W TL    G + F Y     L +G+
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALGL 376

Query: 516 S 514
           S
Sbjct: 377 S 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,024
Number of Sequences: 5004
Number of extensions: 54626
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)