Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0430
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      102   3e-22
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)                    29   3.6  
SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   8.4  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  102 bits (244), Expect = 3e-22
 Identities = 46/62 (74%), Positives = 53/62 (85%)
 Frame = +1

Query: 508 SWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEK 687
           ++GYPNLKSVREL+YKRG+ K+  QR+ +T NSIVEK L KH IICVEDLIHEIFTVGE 
Sbjct: 138 AFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGIICVEDLIHEIFTVGEH 197

Query: 688 FK 693
           FK
Sbjct: 198 FK 199



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 36/56 (64%), Positives = 42/56 (75%)
 Frame = +3

Query: 258 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 425
           YVKEYR KE DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSPK  K    L
Sbjct: 54  YVKEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLL 109



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 31/37 (83%), Positives = 34/37 (91%)
 Frame = +2

Query: 398 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 508
           +VRK+LQL RLRQINNGVFVRLNKAT NMLRI +PYI
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYI 137



 Score = 32.3 bits (70), Expect = 0.39
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 106 EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRADSTSRNTASRN 285
           +D  K+P VPE++LK             +  L ++     K++EIFKRA+   +    + 
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 286 V 288
           V
Sbjct: 63  V 63


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 304 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 441
           PDK A+  TTT P   +   ++     T + R P  S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408


>SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)
          Length = 743

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = -1

Query: 692 LNFSPTVKISWMRSSTQIMLCLWSL-FSTMLLEVIGIRCPLSLANPRLYTNSRTLFKLGY 516
           L++S   KI + + +T    CLW       L ++ GI+ PL +A PR+   ++ L  LG 
Sbjct: 369 LDWSGEDKIKFFKKATG---CLWPPEILKELGDIFGIKDPLKVATPRVLRRNQKL--LGM 423

Query: 515 PQE 507
           P++
Sbjct: 424 PEQ 426


>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 693 LELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGE 562
           +E+F      +DE +    V   E +LN     DWY+LS + GE
Sbjct: 56  VEIFDERSFSVDERVAWGLVQIREDVLNGETIDDWYSLSGKQGE 99


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 279 KERDEIRLARQARNRGNYYVP 341
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,204,873
Number of Sequences: 59808
Number of extensions: 410620
Number of successful extensions: 920
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)