Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0430
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 97 1e-20
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 97 1e-20
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 95 3e-20
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 95 3e-20
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 95 3e-20
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 95 5e-20
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 71 6e-13
At2g44735.1 68415.m05566 expressed protein ; expression supporte... 29 3.0
At1g15740.1 68414.m01888 leucine-rich repeat family protein 29 3.0
At5g48330.1 68418.m05970 regulator of chromosome condensation (R... 29 3.9
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 28 5.2
At5g59510.1 68418.m07458 expressed protein 27 9.0
At5g06740.1 68418.m00762 lectin protein kinase family protein co... 27 9.0
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 27 9.0
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 96.7 bits (230), Expect = 1e-20
Identities = 43/62 (69%), Positives = 52/62 (83%)
Frame = +1
Query: 508 SWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEK 687
++GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICVEDLIHEI TVG
Sbjct: 140 TYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPH 199
Query: 688 FK 693
FK
Sbjct: 200 FK 201
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/56 (51%), Positives = 38/56 (67%)
Frame = +3
Query: 258 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 425
Y KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 56 YAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 111
Score = 57.6 bits (133), Expect = 7e-09
Identities = 25/37 (67%), Positives = 32/37 (86%)
Frame = +2
Query: 398 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 508
+ +K+LQL RLRQI NGVF+++NKATVNMLR EPY+
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYV 139
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 96.7 bits (230), Expect = 1e-20
Identities = 43/62 (69%), Positives = 52/62 (83%)
Frame = +1
Query: 508 SWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEK 687
++GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICVEDLIHEI TVG
Sbjct: 135 TYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPH 194
Query: 688 FK 693
FK
Sbjct: 195 FK 196
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/56 (51%), Positives = 38/56 (67%)
Frame = +3
Query: 258 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 425
Y KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 51 YAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 106
Score = 57.6 bits (133), Expect = 7e-09
Identities = 25/37 (67%), Positives = 32/37 (86%)
Frame = +2
Query: 398 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 508
+ +K+LQL RLRQI NGVF+++NKATVNMLR EPY+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYV 134
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 95.5 bits (227), Expect = 3e-20
Identities = 43/62 (69%), Positives = 51/62 (82%)
Frame = +1
Query: 508 SWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEK 687
++GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVEDLIHEI TVG
Sbjct: 137 TYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPH 196
Query: 688 FK 693
FK
Sbjct: 197 FK 198
Score = 64.9 bits (151), Expect = 5e-11
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +3
Query: 258 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 425
Y KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 53 YSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/37 (64%), Positives = 32/37 (86%)
Frame = +2
Query: 398 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 508
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYV 136
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 95.5 bits (227), Expect = 3e-20
Identities = 43/62 (69%), Positives = 51/62 (82%)
Frame = +1
Query: 508 SWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEK 687
++GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVEDLIHEI TVG
Sbjct: 137 TYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPH 196
Query: 688 FK 693
FK
Sbjct: 197 FK 198
Score = 64.9 bits (151), Expect = 5e-11
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +3
Query: 258 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 425
Y KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 53 YSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/37 (64%), Positives = 32/37 (86%)
Frame = +2
Query: 398 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 508
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYV 136
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 95.5 bits (227), Expect = 3e-20
Identities = 43/62 (69%), Positives = 51/62 (82%)
Frame = +1
Query: 508 SWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEK 687
++GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVEDLIHEI TVG
Sbjct: 137 TYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPH 196
Query: 688 FK 693
FK
Sbjct: 197 FK 198
Score = 64.9 bits (151), Expect = 5e-11
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +3
Query: 258 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 425
Y KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 53 YSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/37 (64%), Positives = 32/37 (86%)
Frame = +2
Query: 398 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 508
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYV 136
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 94.7 bits (225), Expect = 5e-20
Identities = 42/62 (67%), Positives = 51/62 (82%)
Frame = +1
Query: 508 SWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEK 687
++G+PNLKSV+EL+YKRG+ KL+ QRI +T NSIVE+ L KH IIC EDLIHEI TVG
Sbjct: 135 TYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPH 194
Query: 688 FK 693
FK
Sbjct: 195 FK 196
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/56 (51%), Positives = 38/56 (67%)
Frame = +3
Query: 258 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 425
Y KEY KE++ I L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 51 YSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 106
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/37 (64%), Positives = 32/37 (86%)
Frame = +2
Query: 398 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 508
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYV 134
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 71.3 bits (167), Expect = 6e-13
Identities = 28/62 (45%), Positives = 47/62 (75%)
Frame = +1
Query: 508 SWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEK 687
++GYPN KSV++L+YK+G + G +P+T N+I+E+ L +H I+ +EDL++EI VG+
Sbjct: 139 TYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDH 198
Query: 688 FK 693
F+
Sbjct: 199 FR 200
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +3
Query: 258 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 425
+V E+R KE D IR+ ++ + + P ++ L F+IRI+G N + PK+ + N L
Sbjct: 55 FVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNL 110
>At2g44735.1 68415.m05566 expressed protein ; expression supported
by MPSS
Length = 248
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 492 SPSLTFLGIPQLKECP*VSIQTW-IRQAEWTTY 587
SPS + QL+ C V I TW + EWTT+
Sbjct: 138 SPSCMVISYTQLRSCGSVLIDTWRPGETEWTTH 170
>At1g15740.1 68414.m01888 leucine-rich repeat family protein
Length = 585
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 363 VIRIRGINQVSPKSVKFCNCLDCAK*TMVCLYV*IRLL*ICYVSPSLTFLGIPQLK 530
++ +R + ++ ++K+CNC+ A + + +R L IC +T +GI LK
Sbjct: 229 LVHLRALTKLESLNIKWCNCITDADMEPLSVLTNLRSLQIC--CSKITDIGISYLK 282
>At5g48330.1 68418.m05970 regulator of chromosome condensation
(RCC1) family protein contains Pfam PF00415:Regulator of
chromosome condensation (RCC1) domain (5 copies);
similar to UVB-resistance protein UVR8 (GI:5478530)
{Arabidopsis thaliana)
Length = 455
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 574 SAWRIH-VCILTHGHSLSWGIPKNVRLG 494
SA R+H +C+ G + WG KN RLG
Sbjct: 392 SAGRVHSLCVTEKGEAWVWGCGKNGRLG 419
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 250 ADSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 402
A T R+ +R + SD K+ V+ T GK HLS E VS F RS
Sbjct: 408 ASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRRS 455
>At5g59510.1 68418.m07458 expressed protein
Length = 144
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +1
Query: 220 IKKKREIFKRADSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHR 399
+ KK IF+ +S+ +R+ V T +F KP + SSE + F
Sbjct: 9 VVKKDSIFETTHFSSKPVFTRSFSTKTSSSSSKPVFTRSFSTKPTSYSSSEPIFRRSFSA 68
Query: 400 SP*SS 414
P SS
Sbjct: 69 KPTSS 73
>At5g06740.1 68418.m00762 lectin protein kinase family protein
contains Legume lectins beta-chain signature,
PROSITE:PS00307 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 652
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 353 IGICHPNPWYQPSFTEVRKVL 415
+ CHPNP +PS V KVL
Sbjct: 586 LACCHPNPNQRPSMKTVLKVL 606
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 430 QSKQLQNFTDF-GETWLIPRIRMTNANLASPGT 335
+ KQL+ + G TW+ P I +N ++ SPGT
Sbjct: 126 ERKQLRTHLIWTGGTWIQPEIEESNKSMFSPGT 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,010,408
Number of Sequences: 28952
Number of extensions: 281490
Number of successful extensions: 719
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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