Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0428
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.17
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 31 0.23
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.23
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 29 0.70
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 27 2.1
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 27 2.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 27 3.8
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 26 5.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 5.0
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.6
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 26 6.6
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 26 6.6
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 6.6
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 25 8.7
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 25 8.7
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.1 bits (67), Expect = 0.17
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = -1
Query: 739 SSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYSTQL 596
SS S++ S+ STS S SS +S ST ++ SSS+S+ +S+ L
Sbjct: 274 SSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTL 321
Score = 29.5 bits (63), Expect = 0.53
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = -1
Query: 739 SSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYST 602
SS S+T S+ +S+S S S +S ST+TS SSS A S+
Sbjct: 353 SSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSS 398
Score = 29.1 bits (62), Expect = 0.70
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = -1
Query: 739 SSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNS 617
SS S++ S+ STS S SS +S ST++S SSS+S
Sbjct: 291 SSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSS 331
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -1
Query: 739 SSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYS 605
SS +T S+ STS + S SS ++ S+ +S SSS+S+ S
Sbjct: 238 SSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSS 282
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 30.7 bits (66), Expect = 0.23
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = -1
Query: 739 SSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAG 611
+SGSAT +TG +T+ ++S S +S S+ S S+ +AG
Sbjct: 365 TSGSATSATGSATTTSYSSDSSASSSSSSSHESSAASNGFTAG 407
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 30.7 bits (66), Expect = 0.23
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = -1
Query: 742 KSSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAG 611
KSS S++ S+ S S + SKSS S S ITS P+SS+S+G
Sbjct: 197 KSSSSSSSSSKSSASPSSSKSSSKFS-SSSFITSTTPASSSSSG 239
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 29.1 bits (62), Expect = 0.70
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 528 NIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLV 647
N++++ K E + S +G+I P +DED N ++
Sbjct: 89 NLIEQETAKNKEMLNVVSSIGNIVHDSVPVSMDEDNNEII 128
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -2
Query: 387 GVLNWSIEVFYEAYRVSREIGILNWSFDIFYEVYRINREIDVVNGISM 244
G LN++ EV +G NW D FYE Y ++ EID+V+ + M
Sbjct: 492 GDLNYTSEVKERTSSRLSAVGSENWVDDDFYE-YLLS-EIDMVSAVVM 537
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 27.1 bits (57), Expect = 2.8
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = -2
Query: 312 SFDIFYEVYRINREIDVVNGISMSKIATLSTFSLNSIPAKASS*MTSSGMMYIPASMLSY 133
+F F + N +I I + AT+S++ LN+ A+S TSSG + +SY
Sbjct: 504 AFSYFQRLIDHNMQIYDDETIQKAGEATVSSW-LNTPALSAASARTSSGRNSSESDRVSY 562
Query: 132 FGI 124
FG+
Sbjct: 563 FGL 565
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -1
Query: 730 SATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYSTQLIEP 587
S++ S+ STS + S SS ++ ++ +SP SS+ + ST L P
Sbjct: 581 SSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSP 628
Score = 26.2 bits (55), Expect = 5.0
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = -1
Query: 739 SSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYSTQLI 593
SS S+TFS+ STS S SS +S + ++SP PS+S+ S+ +I
Sbjct: 597 SSTSSTFSSA-STSSPSSISSSISS-SSTILSSPTPSTSSLMISSSSII 643
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 733 GSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYSTQLIEP 587
GS T S S+SW SS + + +P SSS S+ S+ ++P
Sbjct: 917 GSGTDSA-TSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDP 964
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -1
Query: 745 LKSSGSATF-STGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYSTQLI 593
+ S+G++T ST ST + + + + +T P PS+S+ Y+T+ I
Sbjct: 235 ITSTGASTVTSTQPSTVTSTQRKNTATTTKTTTYVGPSPSASSVVAYTTKCI 286
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 95 IKPVQIADIPIPKYESIDAGMYIIPDEVIQ---ELALAGIELSENV 223
++ + I + PIP +++D+ IIP ++ ++ +AGI NV
Sbjct: 298 VRAICILNHPIPNTDNLDSVQIIIPQNQVKRKHDIYIAGISSVHNV 343
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -1
Query: 718 STGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYST 602
S+ S++ + S SS +S +T TSP SSS+S+ S+
Sbjct: 129 SSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSS 167
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -1
Query: 739 SSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYST 602
SS SAT + S+S S SS + S ITS SSS + S+
Sbjct: 50 SSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSS 95
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 434 QLRTPMSRLILSAS*TTSMLQLRTPFTSRP 523
QLR+P L S T+S LQ + PFT+ P
Sbjct: 203 QLRSPKISHRLQTSATSSPLQHKRPFTNVP 232
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 537 DEPVEKTNEEIENDSEVGSISWVEYP--AELDEDGNGLVIVDLPIEAQ 674
+E EKT+ E +ND E+ + +E AE +D + L ++ IE Q
Sbjct: 133 EEQEEKTDNEDDNDVEISTQESLENNGLAEKKDDTSSLATLEDDIEGQ 180
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Frame = +3
Query: 63 SHSLERRPPHQSNPSKSRISQYRN---TKA----STLECTSSPTKSFKN 188
+H RRPP Q + ++ + +N TKA S++E T SP K K+
Sbjct: 87 AHPRSRRPPRQISIDSAKKEETKNTGSTKAADTKSSVEATISPLKDTKS 135
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +3
Query: 564 EIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIE 668
++++D+E+G + W + P E D + + + + D E
Sbjct: 457 DVDSDTEIGMLPWQQSP-EFDLENSAMELSDASAE 490
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 25.4 bits (53), Expect = 8.7
Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Frame = -2
Query: 435 WSIDVVYEVYRISQDIGVLNWSIEVFYEAYRVSREIGILNWSFDIF-----YEVYRINRE 271
W ID + + +S D G++ + Y + ++ W+F + E+ +++
Sbjct: 4 WPIDAISKKPSVSLDYGIIGACQLLNPSGYHRAEKVENNEWTFARYDSYTGVELVDLDKR 63
Query: 270 IDVVN---GISMSKIATLSTFSLNSIPAKASS*MTSSGMMYIPASMLS 136
D+++ + K+ L + NS SS S Y+P ++ S
Sbjct: 64 WDILSLNPNYKLPKLTELPAEATNSTRKATSSSFGLSVCRYVPRNLFS 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,314
Number of Sequences: 5004
Number of extensions: 57017
Number of successful extensions: 287
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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