Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0428
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0127 + 21019266-21019670 31 1.3
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114... 30 1.7
03_05_0175 + 21513767-21513903,21534361-21535385,21537375-215375... 30 1.7
05_03_0288 - 11653136-11654074,11655252-11655965 30 2.2
07_01_0975 + 8223269-8224354 29 3.0
07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469 29 5.2
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 29 5.2
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100... 28 6.9
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 28 6.9
03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419 28 6.9
09_04_0541 + 18437075-18440062 28 9.1
>09_06_0127 + 21019266-21019670
Length = 134
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -1
Query: 736 SGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSA 614
SGS+T +TG + S A S SS AS RS P P + +A
Sbjct: 44 SGSSTSTTGTTPSAAASGSSSTASSSRSVNAPPPPPTPTAA 84
>07_01_0162 +
1138420-1138640,1138788-1138830,1139449-1140971,
1141770-1142063,1142145-1142337,1142624-1142694,
1142781-1144200
Length = 1254
Score = 30.3 bits (65), Expect = 1.7
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 3/130 (2%)
Frame = +1
Query: 34 NLQNEIANCPRTHWSGGRRINQTRPNRGY--PNTEIRKHRRWNVHHPRRSHSRTRLGRD* 207
N+ E+A C THW + Q R G+ R+ R+ V P RL R+
Sbjct: 540 NVVTEMAGCRPTHWPRSALVRQRRRRGGWWLVAAPQREGRKRGVRAPNH-----RLMRE- 593
Query: 208 IERKCRQRCDF*H*NS-VDNVDFPVDSVNFVENVEAPVENADFPADSVSFVENLDAPVED 384
CRQ + V N FP+ V+ +++ + N + + S V + +
Sbjct: 594 -SYMCRQHVEEEEAEQLVRNSSFPMQIVHATKSLVLSIYNGNIHEPNRSVVRRFEWYADG 652
Query: 385 ADVLADSVNF 414
A+ SV F
Sbjct: 653 ANDFLRSVEF 662
>03_05_0175 +
21513767-21513903,21534361-21535385,21537375-21537547,
21537849-21538679
Length = 721
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 534 VDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLP 713
V+E +E+ EEIE + E E E+DE+ G + ++ ED +++ +P
Sbjct: 74 VEEEIEEEEEEIEEEEEEVREEVQEAGEEVDEEQQG---ANEEMQKSKEDADESSKSAIP 130
Query: 714 VENVAEPE 737
V+ E E
Sbjct: 131 VQKQEEDE 138
>05_03_0288 - 11653136-11654074,11655252-11655965
Length = 550
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +2
Query: 104 VQIADIPIPKYESIDAGMYIIPDEVIQELALAGIELSENVDNVAIFDIEIP 256
V ++ +P+ E + G ++P ++ +A+ G+E+ N V +F P
Sbjct: 109 VMVSFFGLPEKEVVRIGKAVLPKFFLEGMAMEGLEVVRNAKKVVVFSPLFP 159
>07_01_0975 + 8223269-8224354
Length = 361
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 748 GLKSSGSATF-STGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSA 614
G SSG+A+ + G S S A + G +S G + SP PSSS SA
Sbjct: 301 GPSSSGAASGPAEGPSPSGAAGPAEGPSSYGSTEGPSPSPSSSGSA 346
>07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469
Length = 198
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 64 RTHWSGGRRINQTRPNRGYPNTEIRKHRRWNVHHPRRSHSRTRLG 198
R W G + +TR R +P RRW H PRR T +G
Sbjct: 10 RWRWGGASSLARTRRRRLFP-----AWRRWIRHCPRRIRPETAVG 49
>01_07_0374 +
43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Frame = +3
Query: 546 VEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLEK---------AQ 698
+EK E E D GSIS E +DE N +V ++L + +Q +++ +
Sbjct: 419 LEKIKEHFERD---GSISVAEITEHIDELVNKVVDLELMVSSQSSQIDRLCRENSELESC 475
Query: 699 LVDLPVENVAEPEDLS 746
L L ENV++P+ ++
Sbjct: 476 LQSLEEENVSDPDKVN 491
>06_03_1076 +
27409107-27409204,27409731-27409835,27409915-27410032,
27410180-27410230,27410328-27410419,27410558-27410657,
27411018-27411137,27411227-27411295,27411468-27411514,
27411597-27411652,27412293-27412333,27412570-27412675,
27413891-27414023,27414096-27414645
Length = 561
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 82 GRRINQTRPNRGYPNTEIR-KHRRWNVHHPRRSHSRTRLGRD*IERKCRQRCDF*H 246
G R + +RGY E R K+R N + R+ +R GRD E + R R D H
Sbjct: 461 GERSSSRYDDRGYSKHESRGKYRDGNDDYRRQPGGGSRYGRDKYEGERRYREDDGH 516
>04_04_1457 - 33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 739 SSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYSTQLI 593
SSG T + G STS A S+++ G S + + P S+ S+G Q++
Sbjct: 985 SSGPTTSNEGASTSGAASQTASGVLSG-SGVLNARPGSTTSSGLLAQMV 1032
>03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419
Length = 464
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -2
Query: 216 SLNSIPAKASS*MTSSGMMYIPASMLSYFGIGISAIWTGLIDAAAA 79
SL + PA AS + ++ + ++PAS +S +G + +G AAA
Sbjct: 89 SLAADPAAASRWLAANVLPFVPASTISVVAVGNEVLESGDASLAAA 134
>09_04_0541 + 18437075-18440062
Length = 995
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 84 PPHQSNPSKSRISQYRNTKASTLECTSSPT 173
PP Q P R Q+R TKAS + ++ T
Sbjct: 82 PPQQPQPQTPRQRQHRETKASDVAAAAAST 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,274,485
Number of Sequences: 37544
Number of extensions: 370438
Number of successful extensions: 1310
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -