Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0428
(748 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98) 33 0.19
SB_36252| Best HMM Match : IQ (HMM E-Value=2.7e-35) 33 0.25
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38) 31 0.99
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) 30 2.3
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25) 29 5.3
SB_56345| Best HMM Match : Integrin_alpha (HMM E-Value=0.00047) 28 7.0
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 28 9.2
SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 28 9.2
>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
Length = 242
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 298 ENVEAPVENADFPA-DSVSFVENLDAPVEDADVLAD 402
E VEAPVE + P ++V+ VE + P+E+A+ A+
Sbjct: 165 EEVEAPVEEVEAPVEEAVASVEEAEVPIEEAETQAE 200
Score = 31.5 bits (68), Expect = 0.75
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +1
Query: 298 ENVEAPVENADFPADSV-SFVENLDAPVEDA 387
+ VEAP+E A+ P + V + VE ++AP+E+A
Sbjct: 33 KKVEAPIEEAEAPEEEVEATVEEVEAPMEEA 63
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 295 VENVEAPVENADFPADSVSFVENLDAPVEDADVLADSV 408
VE EAP+E A P S VE +AP E+ + + V
Sbjct: 137 VEITEAPIEEAKAPERVESSVEEAEAPEEEVEAPVEEV 174
>SB_36252| Best HMM Match : IQ (HMM E-Value=2.7e-35)
Length = 442
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 253 SVDNVDFPVDSVNF-VENVEAPVENADFPA-DSVSFVENLDAPVEDADVLAD 402
+ D D P D+ + E+ + P E+AD PA D+ + + +APVE +D AD
Sbjct: 379 AADAPDAPADTTDTPAEDADTPAEDADTPAEDADTATDAAEAPVEASDPPAD 430
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 307 EAPVENADFPA-DSVSFVENLDAPVEDADVLADS 405
+AP + D PA D+ + E+ D P EDAD D+
Sbjct: 384 DAPADTTDTPAEDADTPAEDADTPAEDADTATDA 417
>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
Length = 641
Score = 31.1 bits (67), Expect = 0.99
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -1
Query: 463 NQPGHRRPQLEHRRCLRSLQNQ--PGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFLR 293
NQ H++ Q +H R + QNQ H++ Q +H + Q+Q +RH + + +H R
Sbjct: 568 NQHHHQKQQNQHHRHHQKQQNQHHRHHQKKQNQHYRHHQKQQNQHHHRHRKQQNQHHHR 626
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 493 EHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQ--PGHRRPQLEHRGFLRSLQSQPGNRH 323
+H + Q+ H++ Q +H R + QNQ H++ Q +H R Q+Q +RH
Sbjct: 569 QHHHQKQQNQHHRHHQKQQNQHHRHHQKKQNQHYRHHQKQQNQHHHRHRKQQNQHHHRH 627
>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
Length = 863
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = -1
Query: 739 SSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGY 608
SS S++ S+ S+S + S SS +S S+ +S SSS S GY
Sbjct: 589 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSASLGY 632
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 29.5 bits (63), Expect = 3.0
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Frame = +1
Query: 253 SVDNVDFPV-DSVNFVENVEAPVENADFPADSV--------SFVENLDAPVEDADVLADS 405
S + + PV ++ V+ EAPVE A+ PA+ + VE +AP+E+A+ +
Sbjct: 1082 SFEEAEAPVVETEEPVKEAEAPVEEAEAPAEETEEPVKEAEASVEITEAPIEEAEAPDER 1141
Query: 406 VNFXXXXXXXXXXXXXXXXXXXFVDNVDAPVEDAV 510
V V+ V+APVE+AV
Sbjct: 1142 VESSVEEAEAPEEEVKAP-----VEEVEAPVEEAV 1171
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 253 SVDNVDFPVDSVNF-VENVEAPVENADFPADSVSFVENLDAPVEDAD 390
SV + PV+ E EAP E + P ++ V+ +APV++ +
Sbjct: 1201 SVQKAEAPVEETEAPFEEDEAPAEKTEKPVEAGPSVQEAEAPVKETE 1247
>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
Length = 1508
Score = 28.7 bits (61), Expect = 5.3
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Frame = +1
Query: 85 RRINQTRPNRGYPNTEIRKHRRWNVH-HPR-----RSHSRTRLGRD*IERKCRQRCDF*H 246
++IN R R P ++ KHR W+ H R R H + RD +E+K R D
Sbjct: 1078 KQIND-RSKRNGPRSDPSKHREWDARTHSRERSSEREHHNGKSRRDLLEKKGSSR-DSSR 1135
Query: 247 *NSVDNVDFPVDSVNFVENVEAPVE 321
S D+ P S + ++P +
Sbjct: 1136 DRSPDHYQSPATSDRSPNHYQSPTK 1160
>SB_56345| Best HMM Match : Integrin_alpha (HMM E-Value=0.00047)
Length = 594
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 604 LNILLNWTKMETDLLLLIYLLR-HNPKI*RKPSLLTFPSKMSLNQKT 741
+ + L W K E DL L+YLL KP++L S++ N++T
Sbjct: 395 VTVSLPWKKSEEDLSYLLYLLSVQMSNNTDKPAVLESTSRVGANKRT 441
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 260 STEFQCQKSQRCLHFRSI 207
STEFQC+ S RC+ R +
Sbjct: 1049 STEFQCETSSRCIPLRFV 1066
>SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 276 REIDVVNGISMSKIATLSTFSLNSIPAKASS*MTSSGMMYIP 151
+E+ ++NG S +TL L +P S +T M+Y+P
Sbjct: 502 KELTLINGPGGSGKSTLLLAVLGELPVTEGSILTEGRMVYVP 543
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 60 SSHSLERRPPHQSNPSKSRISQYRNTKASTLECTSSPTKSFKNSPWP 200
SS L PPH N + ++ + A T T+ P S K P P
Sbjct: 627 SSSGLPDSPPHSDNMQEEKLFVSASYCAPTRYTTTPPKNSGKRKPGP 673
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 260 STEFQCQKSQRCLHFRSI 207
STEFQC+ S RC+ R +
Sbjct: 76 STEFQCETSSRCIPLRFV 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,899,320
Number of Sequences: 59808
Number of extensions: 420785
Number of successful extensions: 1547
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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