Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0428
         (748 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetit...    32   2.5  
AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetit...    32   2.5  
AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetit...    31   5.8  
AL445648-3|CAH73090.1|  904|Homo sapiens serine/arginine repetit...    31   5.8  

>AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = -1

Query: 511 KRRPQLEHRRCLRS*--QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQ 338
           K RP+   R   RS      P H RP+  HR   RS +     RRP    R   R +   
Sbjct: 273 KTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRS--RSRRRPSPRRRPSPRRRTPPRRMPPP 330

Query: 337 PGNRHSQLELRHFLRS 290
           P +R S+  +R   RS
Sbjct: 331 PRHRRSRSPVRRRRRS 346


>AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = -1

Query: 511 KRRPQLEHRRCLRS*--QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQ 338
           K RP+   R   RS      P H RP+  HR   RS +     RRP    R   R +   
Sbjct: 273 KTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRS--RSRRRPSPRRRPSPRRRTPPRRMPPP 330

Query: 337 PGNRHSQLELRHFLRS 290
           P +R S+  +R   RS
Sbjct: 331 PRHRRSRSPVRRRRRS 346


>AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
 Frame = -1

Query: 511 KRRPQLEHRRCLRS*--QNQPGHRRPQLEHRRCLRSL--QNQPG-HRRPQLEHRGFLRSL 347
           K RP+   R   RS      P H RP+  HR   RS   + +P   RRP    R   R +
Sbjct: 273 KTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRM 332

Query: 346 QSQPGNRHSQLELRHFLRS 290
              P +R S+  +R   RS
Sbjct: 333 PPPPRHRRSRSPVRRRRRS 351


>AL445648-3|CAH73090.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
 Frame = -1

Query: 511 KRRPQLEHRRCLRS*--QNQPGHRRPQLEHRRCLRSL--QNQPG-HRRPQLEHRGFLRSL 347
           K RP+   R   RS      P H RP+  HR   RS   + +P   RRP    R   R +
Sbjct: 273 KTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRM 332

Query: 346 QSQPGNRHSQLELRHFLRS 290
              P +R S+  +R   RS
Sbjct: 333 PPPPRHRRSRSPVRRRRRS 351


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,454,187
Number of Sequences: 237096
Number of extensions: 1906095
Number of successful extensions: 5564
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5526
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)