Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0426
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   3.4  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    26   3.4  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    25   6.0  
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp...    25   6.0  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    25   6.0  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    25   6.0  

>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 214 KEVNVSNSNAQAVFVDTRSVGVNNFNVLSIVCSQ 113
           +E ++S ++  ++FV   S  VN F+V S+  S+
Sbjct: 176 REKSISKASEYSIFVGDLSPNVNEFDVYSLFASR 209


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 129 ASFVPSRSTLFSQSRAEGSRPVILATLPSK 40
           + F      +FS    EGSRPV LA L S+
Sbjct: 461 SGFSVREEAVFSSPTTEGSRPVSLARLKSE 490


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 455 KWNGYLMPVFTRNIPDPCFTSL 390
           K +GY+ P+F   +P  CF SL
Sbjct: 374 KKSGYMQPLFDLTMPLGCFDSL 395


>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
           II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 140 EVIHTDGSGVNKNGLGVAIGHIDFFVNGRLVQP 238
           EV+    + VNK G    IG ++ FV+  LV P
Sbjct: 86  EVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPP 118


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 31  WKKFGRQSSKNYG 69
           WKKFG+++ KN G
Sbjct: 71  WKKFGKEAGKNSG 83


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 232 DKTAVDKEVNVSNSNAQAV--FVDTRSVGVNNFN 137
           DK    K+  V NSN +++  F    ++G+N+FN
Sbjct: 72  DKKTEFKQDEVPNSNGKSIPTFHPCNNIGINDFN 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,668
Number of Sequences: 5004
Number of extensions: 45595
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)