Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0426
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0474 + 18534071-18534238,18534349-18534445,18534992-185351...    29   3.5  

>07_03_0474 +
           18534071-18534238,18534349-18534445,18534992-18535122,
           18535191-18535286,18535459-18535464,18535521-18535688,
           18535892-18536020,18536613-18536673,18536928-18537031,
           18537137-18537220,18538433-18538461,18538506-18538617,
           18539200-18539313,18539767-18539832,18540237-18540309,
           18540396-18540482,18540710-18540764,18540869-18540940,
           18541039-18541101,18541177-18541294,18541377-18541451
          Length = 635

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
 Frame = +2

Query: 23  GVTGRNLEGKVARITGLDPSARDWENNVLRLGTNDAQYVE-VIHTDGSGV------NKNG 181
           G+  +N  G   R  G+  SA D    +  +    A  V+ ++ TDGS +        +G
Sbjct: 185 GLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPADQVDMIVVTDGSRILGLGDLGVHG 244

Query: 182 LGVAIGHIDFFVNGRLVQP 238
           +G+AIG +D +V    + P
Sbjct: 245 IGIAIGKLDLYVAAAGINP 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,566,696
Number of Sequences: 37544
Number of extensions: 311424
Number of successful extensions: 765
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)