Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0426
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      67   1e-11
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            57   1e-08
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)                  46   3e-05
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)                  34   0.072
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)                29   2.0  
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 6/89 (6%)
 Frame = +2

Query: 2   NLGAHVAGVTGRNLEGK---VARITGLDPSARDW---ENNVLRLGTNDAQYVEVIHTDGS 163
           + GAHVAG  GR ++ +   + RIT LDP+A  W    +  +RL T+DA +V+VIHT   
Sbjct: 197 SFGAHVAGYVGRRMKKRGRMIDRITALDPAAM-WFHKHHEDVRLDTSDALFVDVIHTSAD 255

Query: 164 GVNKNGLGVAIGHIDFFVNGRLVQPGCTN 250
                G+   IGH DF+ NG   QPGC N
Sbjct: 256 ----YGITSTIGHADFYPNGGKKQPGCDN 280


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 5/86 (5%)
 Frame = +2

Query: 2   NLGAHVAGVTGRNLEG---KVARITGLDPSARDWEN-NV-LRLGTNDAQYVEVIHTDGSG 166
           +LGAH++G  GR +     K+ RITGLDP++  + N +V +RL  +DA +V+V+HTD   
Sbjct: 695 SLGAHISGYVGRRIAKTGQKLNRITGLDPASIHFVNAHVDVRLDPSDADFVDVMHTD--- 751

Query: 167 VNKNGLGVAIGHIDFFVNGRLVQPGC 244
           ++  G     GHIDF+ NG   QPGC
Sbjct: 752 MDLAGTPTVSGHIDFYPNGGKKQPGC 777


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
 Frame = +2

Query: 2   NLGAHVAGVTGRNLE--GK-VARITGLDPSARDWENNV--LRLGTNDAQYVEVIHTDGSG 166
           +LGAH++G  G+ L+  G+ + RITGLDP+   ++     +RL   DAQ+V+VIHT    
Sbjct: 179 SLGAHISGYVGQRLKRIGRHLDRITGLDPATLMFKGEAPDVRLDRLDAQFVDVIHTS--- 235

Query: 167 VNKNGLGVAIGHIDFFVNGRLVQPGCT 247
               G+    GH+DF+ NG   Q GC+
Sbjct: 236 -YVFGITAPHGHMDFYPNGGTSQRGCS 261


>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
          Length = 408

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +2

Query: 71  LDPSARDWENNVL--RLGTNDAQYVEVIHTDGSGVNKNGLGVAIGHIDFFVNGRLVQPGC 244
           LDP+   + N  +  RL  +DA++V+V+HTD   ++  G     GHIDF+ NG   QPGC
Sbjct: 2   LDPAGLYFVNEHVDVRLDPSDAEFVDVMHTD---MDFAGTSTQSGHIDFYPNGGKNQPGC 58


>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
          Length = 131

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = +2

Query: 2   NLGAHVAGVTGRNLEGKVARIT 67
           +LGAHVAG  G  L GKV RIT
Sbjct: 109 SLGAHVAGYAGERLSGKVGRIT 130


>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
          Length = 450

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 240 PGWTRRPLTKKSMC-PIATPKPFLLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGSRP 67
           P    +P+    +C P+ +P P +++P P   I  +   + VP+  TL  QS A    P
Sbjct: 193 PSPASQPVAPSPVCIPVQSPAPNMMSPSPQQFIAQSPAPTSVPTPGTLNVQSPASILNP 251


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = -1

Query: 396 KFGSTHFNYKSSAIICGY-LRFCAALISVMFAMRNCCSKNFISAVVAT*LFVQP--GWTR 226
           K G  HF+      +  Y L +C ++   + ++ NC S  F  ++V   + V P    T 
Sbjct: 111 KTGIKHFSIAKCLALTVYPLHYCLSVGIPLLSVLNCLSVTFCLSIVCLSITVCPLLSITV 170

Query: 225 RPLTKKSMCPI 193
            PL     CP+
Sbjct: 171 CPLLSVCYCPL 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,934,056
Number of Sequences: 59808
Number of extensions: 361057
Number of successful extensions: 875
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)