Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0426
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024796-2|AAK29892.2|  446|Caenorhabditis elegans Hypothetical ...    30   1.0  
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    28   5.4  
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    28   5.4  
U00058-6|AAA50729.2|  189|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z79753-4|CAB02084.2|  396|Caenorhabditis elegans Hypothetical pr...    27   9.5  
X59156-6|CAA41878.1|  160|Caenorhabditis elegans transposase pro...    27   9.5  

>AC024796-2|AAK29892.2|  446|Caenorhabditis elegans Hypothetical
           protein Y48G1C.4 protein.
          Length = 446

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -1

Query: 450 EWVPHA-GIYSEHSRPMLYKFGSTHFNYKS 364
           EW  HA G+++EH+  ++   GS+++ Y+S
Sbjct: 354 EWTFHAKGLWAEHNNQLMTLIGSSNYGYRS 383


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 259 YIVIRAARLDKTAVDKEVNVSNSNAQAVFVDTRSVGVNNFNVLSIV 122
           YI +   +L K  +D+ +NV   + QA+     S+  N+FN  S +
Sbjct: 220 YIAVEGKQL-KNELDRIINVDLDSCQALCTQRLSISSNDFNCKSFM 264


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 259 YIVIRAARLDKTAVDKEVNVSNSNAQAVFVDTRSVGVNNFNVLSIV 122
           YI +   +L K  +D+ +NV   + QA+     S+  N+FN  S +
Sbjct: 220 YIAVEGKQL-KNELDRIINVDLDSCQALCTQRLSISSNDFNCKSFM 264


>U00058-6|AAA50729.2|  189|Caenorhabditis elegans Hypothetical
           protein W03A5.5 protein.
          Length = 189

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
 Frame = -1

Query: 288 SKNFISAVVAT*LFVQPGWTRRPLTKKSMCPI----ATPKPFLLTPDPSV*ITSTY*ASF 121
           S+N +SA  A      P  TR P   +  C +     +P    LTP       ST   SF
Sbjct: 85  SENDLSAGAAGASTDFPEVTRTPSYLRISCALNGYTKSPNKSDLTPIAPHPPVSTMGESF 144

Query: 120 VPSRSTLFSQSRAEGSRPVILATLP 46
           V  RS +FSQ +     P   + LP
Sbjct: 145 VERRSRMFSQPQQRNPAPGFSSPLP 169


>Z79753-4|CAB02084.2|  396|Caenorhabditis elegans Hypothetical
           protein F20G2.4 protein.
          Length = 396

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 214 CQRPSCPTGLHE*LCSHNRAYEVFAATITHGK 309
           C R +CP G    LC+  R  + +    T+G+
Sbjct: 248 CSRCNCPKGFFGKLCNERRQQDSYELKATYGR 279


>X59156-6|CAA41878.1|  160|Caenorhabditis elegans transposase
           protein.
          Length = 160

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 262 GYIVIRAARLDKTAVD--KEVNVSNSNAQAVFVDTRSVGVNNFNVLSIVC 119
           G  ++ + R++ + VD  +++ +  S  +    D   + V+NF   S+VC
Sbjct: 92  GLDLLNSTRIENSLVDLVQDIGIDESQEEGNESDNSIISVDNFCFFSVVC 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,485,421
Number of Sequences: 27780
Number of extensions: 267841
Number of successful extensions: 684
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)