Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0426
         (573 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g13560.1 68415.m01495 malate oxidoreductase, putative similar...    29   2.2  
At3g49200.1 68416.m05377 hypothetical protein                          28   5.1  
At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    27   6.7  
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG...    27   6.7  
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /...    27   6.7  
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ...    27   8.9  

>At2g13560.1 68415.m01495 malate oxidoreductase, putative similar to
           NAD-dependent malic enzyme 62 kDa isoform, mitochondrial
           precursor (EC 1.1.1.39) (NAD-ME) (SP:P37221) {Solanum
           tuberosum}
          Length = 623

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
 Frame = +2

Query: 23  GVTGRNLEGKVARITGLDPSARDWENNVLRLGTNDAQYVE-VIHTDGSGV------NKNG 181
           G+  +N  G   R  G+  SA D    +  +    A+ V+ ++ TDGS +        +G
Sbjct: 148 GLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVHG 207

Query: 182 LGVAIGHIDFFVNGRLVQP 238
           +G+A+G +D +V    + P
Sbjct: 208 IGIAVGKLDLYVAAAGINP 226


>At3g49200.1 68416.m05377 hypothetical protein
          Length = 507

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
 Frame = +2

Query: 41  LEGKVARITG--LDPSARDWENNVLRLGTNDAQYVEVI---HTDGSGVNKNGLGVA 193
           LE  V+ +T   LD S   WE ++L L T+DA+ V V+   H+ G G++   L +A
Sbjct: 120 LESYVSDLTTIPLDTSKPLWEVHLLDLKTSDAENVAVLRIHHSLGDGMSMMSLVLA 175


>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 174 LLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGSRPVILATLPSKFLPVTPAT 16
           L +  P+   T+++    VP  ST  S S+ + + P    +LPS      PAT
Sbjct: 451 LASSTPATGSTNSFTGFAVPKTSTPASSSQPQTTSPAFSFSLPSSTSTTAPAT 503


>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
            identical to P-glycoprotein GI:3849833 from [Arabidopsis
            thaliana]; homologous to mammalian mdr gene,contains
            ATP-binding cassette; related to multi drug resistance
            proteins
          Length = 1286

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 280  VFAATITHGKHYGNQCSTEAEI 345
            +F  TI     YG++C+TEAEI
Sbjct: 1111 LFGTTIYENIAYGHECATEAEI 1132


>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
           gibberellin-responsive modulator identical to GB:Y11336,
           member of SCARECROW family
          Length = 587

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 59  RITGLDPSARDWENNVLRLGTNDAQYVEVIHTD 157
           R+TG+ P A D  +++  +G   AQ  E IH +
Sbjct: 354 RLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVE 386


>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 679

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 384 YCQTCKAWVWNVPSKYRHEVPIPFVMPTKLKTKFS 488
           +C TC+     V + Y HE+  PF     LK  FS
Sbjct: 110 HCPTCEMCYHKVCNLYPHEIRHPFHAQHPLKLTFS 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,632,156
Number of Sequences: 28952
Number of extensions: 243156
Number of successful extensions: 611
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)