Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0425
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    29   0.29 
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    27   1.2  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    25   4.8  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   6.3  
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp...    25   6.3  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   8.4  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   8.4  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   8.4  

>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 273 NNFNVLTSFVPSRSTLFSQSRAEGSRPVILATLPSK 166
           N++ + + F      +FS    EGSRPV LA L S+
Sbjct: 455 NSYKLPSGFSVREEAVFSSPTTEGSRPVSLARLKSE 490


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 77  FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 208
           F+K+ KL  +K  I+G ++GA  A VT      KV ++  +D S
Sbjct: 80  FMKDHKL--DKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNS 121


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 357 DKTAVDKEVNVSNSNAQAV--FVDTRSVGVNNFN 262
           DK    K+  V NSN +++  F    ++G+N+FN
Sbjct: 72  DKKTEFKQDEVPNSNGKSIPTFHPCNNIGINDFN 105


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 323 PIAMPKPFLLTPDPSV*IT 267
           P AMP P + +P PS+ +T
Sbjct: 555 PTAMPHPNITSPSPSISVT 573


>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
           II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 265 EVIHTDGSGVNKNGLGIAIGHIDFFVNGRLVQP 363
           EV+    + VNK G    IG ++ FV+  LV P
Sbjct: 86  EVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPP 118


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 184 KNYGSRPFGS*LGKQRTTTGNKR 252
           +NY   PF    G+QRT+ GN R
Sbjct: 52  ENYPQLPFVLATGRQRTSVGNIR 74


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 59  GSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGK 178
           G  +A  L    L +  V +VG++LGA V     R LE K
Sbjct: 553 GQLLADMLCYRSLGVRPVTLVGYSLGARVIYYCLRELEKK 592


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 339 KEVNVSNSNAQAVFVDTRSVGVNNFNVLTSFVPSRSTL 226
           +E+NVSN+  + + +D   V   +F+V+ +F+  R  L
Sbjct: 648 EELNVSNNPLRFLIIDFSLVNGADFSVVQAFLRIRRML 685


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,212
Number of Sequences: 5004
Number of extensions: 36306
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)