Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0425
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    31   0.39 
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544...    29   1.6  
06_03_1043 - 27097094-27097735                                         28   4.8  
11_02_0068 + 7991816-7992603,7995209-7997177                           27   6.3  
06_01_0671 - 4899611-4899829,4900870-4901448                           27   8.4  
03_02_0918 + 12381662-12383118,12383249-12384707                       27   8.4  

>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 35  AVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 187
           A +A   +   IA +LKN KL ++++ +    L   +A +    + GK+ +
Sbjct: 405 AKLAANWIMGDIAAYLKNEKLSIDEIKLTPLELSELIASIRNGTISGKIGK 455


>04_03_1018 +
           21753634-21753640,21754282-21754315,21754413-21754432,
           21754485-21755782
          Length = 452

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 283 GSGVNKNGLGIAIGHIDFFVNGRLVQPGCTNNLCSHNRAYEVFAAT 420
           G  ++   +G  +GH+ +  +G+    GC   + S   A E  AA+
Sbjct: 320 GGAIHHGAVGALLGHLSWAASGKCASGGCAGAVPSALAAVEALAAS 365


>06_03_1043 - 27097094-27097735
          Length = 213

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = -2

Query: 216 SRAEGSRPVILATLPSKFLPVTPAT*APRLKPTMCTLLSGNLRFFKKVA---ILDPTPVT 46
           S A G + ++LA   ++ L   P +  PRL PT+  L +G       VA   ++ P  V 
Sbjct: 111 SDASGHKTLLLANPITRLLAALPISPTPRLSPTV-GLAAGPTSIIAVVAGDDLVSPFAVK 169

Query: 45  AITAVEYVDRLNLVP 1
            I+A  +V     VP
Sbjct: 170 NISADTFVADAASVP 184


>11_02_0068 + 7991816-7992603,7995209-7997177
          Length = 918

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 330 NVSNSNAQAVFVDTRSVGVNNFNVLT-SFVPSRSTLFSQSR 211
           N+   N  ++FVD    G +NF++ T   VPSR   FS  R
Sbjct: 710 NLGTYNLHSLFVDINGYGEDNFSLDTWQPVPSRLRRFSIDR 750


>06_01_0671 - 4899611-4899829,4900870-4901448
          Length = 265

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -2

Query: 192 VILATLPSKFLPVTPAT*APRLKPTMCTLLSGNLRFFKKVAILDPTPVTA 43
           V  A  PS  LP    +  PR +P +CT  +   R     A   PTP  A
Sbjct: 5   VSTACRPSLLLPPRQRSSPPRPRPLLCTPSTAAFRRGALSATTTPTPARA 54


>03_02_0918 + 12381662-12383118,12383249-12384707
          Length = 971

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 332 SMCPIAMPKPFLLTPDPS 279
           S CP  +PKP +L PD S
Sbjct: 572 SSCPGVLPKPIVLNPDSS 589


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,382,483
Number of Sequences: 37544
Number of extensions: 243782
Number of successful extensions: 658
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)