Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0425
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f...    33   0.11 
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f...    32   0.25 
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f...    32   0.25 
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop...    28   4.0  
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop...    28   4.0  
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop...    28   4.0  
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG...    27   5.3  
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)...    27   7.0  
At4g14860.1 68417.m02283 ovate family protein 58% similar to ova...    27   7.0  
At3g60070.1 68416.m06708 lactose permease-related contains weak ...    27   7.0  
At3g25700.1 68416.m03198 chloroplast nucleoid DNA-binding protei...    27   7.0  
At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    27   9.3  
At1g48090.2 68414.m05363 C2 domain-containing protein contains P...    27   9.3  
At1g48090.1 68414.m05362 C2 domain-containing protein contains P...    27   9.3  

>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 475

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 41  MAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITG 196
           +A   + S IA +LKN KL +N + +    L   +A +    + GK+ +  G
Sbjct: 413 LAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGKEVG 464


>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 488

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 41  MAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 187
           +A   + S IA +LKN KL +N + +    L   +A +    + GK+ +
Sbjct: 413 LAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGK 461


>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 550

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 41  MAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 187
           +A   + S IA +LKN KL +N + +    L   +A +    + GK+ +
Sbjct: 413 LAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGK 461


>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 433

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +1

Query: 358 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 468
           +PGC  N C+H RA  +   T+  G+    ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293


>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 511

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +1

Query: 358 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 468
           +PGC  N C+H RA  +   T+  G+    ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293


>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 536

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +1

Query: 358 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 468
           +PGC  N C+H RA  +   T+  G+    ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293


>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
            identical to P-glycoprotein GI:3849833 from [Arabidopsis
            thaliana]; homologous to mammalian mdr gene,contains
            ATP-binding cassette; related to multi drug resistance
            proteins
          Length = 1286

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 406  VFAATITHGKHYGNQCSTEAEI 471
            +F  TI     YG++C+TEAEI
Sbjct: 1111 LFGTTIYENIAYGHECATEAEI 1132


>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
           identical to SP|O65607 DNA mismatch repair protein MSH3
           (AtMsh3) {Arabidopsis thaliana}
          Length = 1081

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 4/105 (3%)
 Frame = +1

Query: 160 KKFGRQSSKNYGSRPFGS*LGKQRTTTGNKRCQYVEVIHTDGSGVNKNGLGIAIGHIDFF 339
           K+FG +     G+  F S       T      Q +EV+  +  G     L   + H    
Sbjct: 397 KQFGFERILYQGAS-FRSLSSNTEMTLSANTLQQLEVVKNNSDGSESGSLFHNMNHTLTV 455

Query: 340 VNGRLVQPGCTNNLCSHN----RAYEVFAATITHGKHYGNQCSTE 462
              RL++   T+ LC  N    R   V   +   G H  +Q S+E
Sbjct: 456 YGSRLLRHWVTHPLCDRNLISARLDAVSEISACMGSHSSSQLSSE 500


>At4g14860.1 68417.m02283 ovate family protein 58% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 182

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -2

Query: 408 NFISXXXXXXXXXXXRLDKTAVDKEVNVSNSNAQAVFVDTRSVGVNNFNVLTSFVPSRST 229
           NF+             L  +     + VSN NAQ+    T S+ +NNFN L   +   S 
Sbjct: 3   NFLRKKLHLCFSSSGGLSPSIPSSPIIVSNHNAQSHPHHTPSIFINNFNSLYDQLSVSSP 62

Query: 228 LFSQSRAE 205
           L  +  +E
Sbjct: 63  LHRRHSSE 70


>At3g60070.1 68416.m06708 lactose permease-related contains weak
           similarity to Lactose permease (Lactose-proton symport)
           (Lactose transport protein). (Swiss-Prot:O33814)
           [Staphylococcus xylosus]
          Length = 456

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 321 NSNAQAVFVDTRSVGVNNFNVLTSFVPSRSTLFSQSRAEGS 199
           N+N Q+V++     G+     L SFV    T F +  A GS
Sbjct: 406 NNNQQSVYLSVTRYGLGLVPALCSFVGVAVTFFMELEAAGS 446


>At3g25700.1 68416.m03198 chloroplast nucleoid DNA-binding
           protein-related contains weak similarity to CND41,
           chloroplast nucleoid DNA binding protein (GI:2541876)
           [Nicotiana tabacum]
          Length = 452

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 35  AVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVT 157
           A +A     S IA   + +KLP+      GF+L  +V+GVT
Sbjct: 332 AFLAEPAYRSVIAAVRRRVKLPIADALTPGFDLCVNVSGVT 372


>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 264 NVLTSF-VPSRSTLFSQSRAEGSRPVILATLPSKFLPVTPAT 142
           N  T F VP  ST  S S+ + + P    +LPS      PAT
Sbjct: 462 NSFTGFAVPKTSTPASSSQPQTTSPAFSFSLPSSTSTTAPAT 503


>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
           profile: PF00168 C2 domain
          Length = 3427

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 56  VGSSIATFLKNLKLPLNKVHI 118
           +GS IAT + NLK+ ++ VHI
Sbjct: 171 LGSIIATIIGNLKVSISNVHI 191


>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
           profile: PF00168 C2 domain
          Length = 4144

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 56  VGSSIATFLKNLKLPLNKVHI 118
           +GS IAT + NLK+ ++ VHI
Sbjct: 171 LGSIIATIIGNLKVSISNVHI 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,973,894
Number of Sequences: 28952
Number of extensions: 193891
Number of successful extensions: 536
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)