Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0424
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   3.6  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    26   4.7  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    26   4.7  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = -3

Query: 632  YKFVIIK**LIKTNRKTFTIVSYHKP*RGQTQLVQWPLVHSSMLWGLQTLRYTIRRQN*Q 453
            YKF   K  L+K   KT+T+         QT  V + + HS+    + T  Y        
Sbjct: 1043 YKFTTSKISLVKNPTKTYTVTDVETNVVVQTHTVSY-VEHSTSYTWVHTTLYEYADVEAS 1101

Query: 452  TRSRSE 435
            T+S SE
Sbjct: 1102 TKSTSE 1107


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 125 VWR*AAIKTHGNLTAITNKLILLNVS 48
           +W+  ++K   NLTA TN+++ L++S
Sbjct: 363 LWKYPSLKNIANLTAHTNRVLYLSMS 388


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 192 RIKKLWRTTCNVAS*NKECSKTSLEMSSNKDARQFDSN 79
           R+   W T C        CS+T LE     D+R + ++
Sbjct: 224 RVSWAWSTVCGCYKNTYTCSQTCLEDEVQDDSRYYSAS 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,100
Number of Sequences: 5004
Number of extensions: 55703
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)