Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0424
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0438 + 21244735-21244782,21245089-21245274,21245307-212453...    31   0.70 
04_01_0011 + 207319-207605,207935-208184,208559-208729                 28   6.5  

>05_04_0438 +
           21244735-21244782,21245089-21245274,21245307-21245384,
           21245385-21245678,21246137-21246262,21246935-21247168,
           21247534-21248061
          Length = 497

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 22  RIV*NPK*DDTFKSISLFVIAVKLPCVFIAAHLQTGFAAF 141
           R++  P       S+SL V+ V + CVF+A HL+  F+ +
Sbjct: 23  RLIFGPDAKSLLVSVSLIVVPVLVFCVFVARHLRHQFSTY 62


>04_01_0011 + 207319-207605,207935-208184,208559-208729
          Length = 235

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 372 HRHLQCKCGYNGSAPPFKPKRITAS 298
           HR++ C    N SAP F+P +I A+
Sbjct: 38  HRYVGCCHNINASAPDFRPHQINAA 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,598,302
Number of Sequences: 37544
Number of extensions: 382047
Number of successful extensions: 871
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)