Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0424
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34714| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_51519| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_37935| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_34423| Best HMM Match : 7tm_2 (HMM E-Value=6e-07)                   28   8.8  

>SB_34714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 76  VIAVKLPCVFIAAHLQTGFAAFFISACHIACCSPQLLYPSAG 201
           VIA+  P +    HL   +   +  A H  CC+P +L+P++G
Sbjct: 267 VIAIGRPNINEVRHLFPPYLYGYTHAPH--CCTPAMLFPASG 306


>SB_51519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 411 SSQPTRC*VVTGAHRHLQCKCGYNGSAPPFKPKRITASR 295
           ++  T+C  VT  HR+      YN   PPF+    T  R
Sbjct: 91  ATSTTQCPFVTLQHRNSVLPSRYNNHTPPFRHATTTTQR 129


>SB_37935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 69  FVCYCCQIAVRLY-CCSSPDWFC 134
           FVCYC ++  R   CC+  + FC
Sbjct: 2   FVCYCDEVCERFVDCCADYEHFC 24


>SB_34423| Best HMM Match : 7tm_2 (HMM E-Value=6e-07)
          Length = 656

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 69  FVCYCCQIAVRLY-CCSSPDWFC 134
           FVCYC ++  R   CC+  + FC
Sbjct: 448 FVCYCDEVCERFVDCCADYEHFC 470


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,509,971
Number of Sequences: 59808
Number of extensions: 438832
Number of successful extensions: 931
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)