Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0424
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81044-9|CAB02812.2|  677|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical ...    28   5.9  
AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z81044-9|CAB02812.2|  677|Caenorhabditis elegans Hypothetical
           protein C30H6.6 protein.
          Length = 677

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 579 YYRIVPQAVKGTDAVGAMAAGSFIYVVGFTNVEIYYSTSKLTNTE*VR 436
           Y++  P ++ G  A+GA+A  + +Y +    V I  S  K+  +  +R
Sbjct: 133 YFKEQPMSLVGLLAIGALATAAKVYCLQIAGVNIVGSLRKMVYSSIIR 180


>AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical
           protein R10F2.6 protein.
          Length = 1150

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 336 SAPPFKPKRITASR*K*AGWWYLPARSPRGPT 241
           SAPP  PK +     + A W  +PA+ PRG T
Sbjct: 404 SAPPRPPKNLALEA-RPARWVPIPAKRPRGET 434


>AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical
           protein Y106G6H.7 protein.
          Length = 893

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = -2

Query: 267 PARSPRGPTTSKGARSGPGPKESS*RIKKLWRTTCNVAS*NKECSKTSLEMSSNKDARQF 88
           P  + R        R+     E+   I  +   T +V+   +E  K+ LE    +     
Sbjct: 8   PVAAARRHRPLPAERATSNSNETGLLINVIRSLTSSVSEDQREVEKSRLEKGYKESGALI 67

Query: 87  DS--NNKQTNTLKCIISFRILNDPCA*C 10
           D    N Q +  KC++SFR ++   + C
Sbjct: 68  DRLVKNHQQDVEKCLVSFRDVSSKISNC 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,871,394
Number of Sequences: 27780
Number of extensions: 325997
Number of successful extensions: 878
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)