Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0424
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger) fa...    29   2.4  
At4g24630.1 68417.m03527 zinc finger (DHHC type) family protein ...    28   5.5  
At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II...    28   5.5  
At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II...    28   5.5  
At3g29450.1 68416.m03699 hypothetical protein                          27   9.5  

>At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 508

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 132 CCILYFSLPHCMLFSTASLSVSWTPLDRALTWHLYWW*DLLD 257
           CC L  S   C+    A  S  WTP+  A +WH  W  ++L+
Sbjct: 236 CCQLLISKGACL---AAVNSNGWTPMMVARSWHRNWLEEILN 274


>At4g24630.1 68417.m03527 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 374

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 4   KLALSTRIV*NPK*DDTFKSISLFVIAVKLPCVFIAAHLQTGFAAF 141
           K  L  R++  P       ++ L ++ V L CVF+A HL+  F+ +
Sbjct: 14  KFILGGRLIFGPDARSLPLTLLLIIVPVVLFCVFVARHLRHEFSPY 59


>At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 613

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 368 DIYNVNVVTTALPHPSNRNASLLHGRNKQGGGTYPRG 258
           D+ NV+ VT    H   R +   HG N   GG   RG
Sbjct: 51  DVPNVHCVTDEDSHNGRRGSEADHGNNISDGGVSVRG 87


>At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 646

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 368 DIYNVNVVTTALPHPSNRNASLLHGRNKQGGGTYPRG 258
           D+ NV+ VT    H   R +   HG N   GG   RG
Sbjct: 51  DVPNVHCVTDEDSHNGRRGSEADHGNNISDGGVSVRG 87


>At3g29450.1 68416.m03699 hypothetical protein
          Length = 522

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 343 QRLCPTLQTETHHCFTVEISRVVV 272
           Q  CP +Q +  HCF  E+ R ++
Sbjct: 139 QMACPKIQKDIVHCFAEEVIRSII 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,850,665
Number of Sequences: 28952
Number of extensions: 298287
Number of successful extensions: 655
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)