Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0421
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    27   1.6  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   3.6  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   3.6  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   4.8  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   6.3  
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    25   6.3  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    25   8.3  
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    25   8.3  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   8.3  

>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 225 ARERIQVEVRNGLNLIFGNTLPSKNDVATEIVRV 124
           A E    E RN L + F  TLP +ND   ++ +V
Sbjct: 448 AHESKLAEARNLLRMTFEETLPLQNDTINKVEKV 481


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +3

Query: 297 RSQNSFSVVQSIVRTERQFTTSIPSATVPANGRGVISATIAGVPFNSIFV 446
           R ++S ++  +I  TER     + +     +GRG++ AT +   F  +F+
Sbjct: 176 RKKSSEAISSNISLTERNNIAFMGTLVRHGHGRGIVVATGSDTEFGRVFL 225


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 444 VLATDYTEYALVYSCRNIDSARNKSTAGNSAEHAVDSPQLLTT 572
           ++A DYT+++L+   R+  S  + S   N  EH     Q+L T
Sbjct: 467 IVADDYTKFSLLSPIRSDMSGISASPNTNLKEHRTRILQMLAT 509


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 18/92 (19%), Positives = 36/92 (39%)
 Frame = +1

Query: 217 FSGTWHEVARFPSTCKMASVQQRTTQSEARIHSVSYKVLSGPKDNSQLRYRPQQYLLMEE 396
           F+G  H +    +   +  +QQ+   S    + V Y V S     + L  +   Y++ + 
Sbjct: 465 FAGMGHVLLSTATQVHLFDLQQKKIVSSFNANRVKYVVWSNDNSQAALLGKHYVYIVKKN 524

Query: 397 ESSVPRLREFHSTASSFWLPTTQNMLWYTVAE 492
              +  + E     S+ W+    N+L Y   +
Sbjct: 525 LELITSIHETIRIKSAVWV--ENNVLLYATLD 554


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 313 SVSYKVLSGPKDNSQLRYRPQQYLLMEEESSVPRLREFHSTASSFW 450
           S+S K L   + +  L  + ++ LL   E+S+P     +ST   +W
Sbjct: 385 SISVKALVNTRCDKNLSEKGEKSLLDSAENSLPASANQYSTHFRYW 430


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/51 (21%), Positives = 22/51 (43%)
 Frame = -1

Query: 515 FVSGAVDVSATVYQSIFCVVGSQNEDAVEWNSRNRGTDDSSSISRYCCGRY 363
           FVS     +  + Q +  ++     ++  WN  NR +D+   +    CG +
Sbjct: 289 FVSVIAAFTIGIIQMLMLIISVHPMESTFWNGLNRLSDNYEIVGGCICGAF 339


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 421 PAIVALMTPLPLAGTVADG 365
           P +VA MTPLP+ G    G
Sbjct: 455 PGMVAAMTPLPVIGVPVKG 473


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 568 VSSCGESTACSAEFPAVDLFLALSMFLQLYTRAY 467
           + +CG+S   +A F  ++     S+  QLY R Y
Sbjct: 59  MQTCGDSVQGNAAFSILNFMTTNSLVGQLYQRLY 92


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 258 LQNGQCAATDYTVRSQNSFSVVQSIVRTERQFTTSIPSATVPANGRGVISATIAGVP 428
           L+    +A +YT     S S        +  + TS P  T+P+  +G I +  AG P
Sbjct: 328 LKEKYASAANYTGDGDYSSSPATLTCPADDSYFTSFPLPTMPSEAKGFIESG-AGQP 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,434
Number of Sequences: 5004
Number of extensions: 52049
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)