Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0421
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1050 - 33757432-33757664,33757767-33758645,33758720-337591...    31   0.52 
07_01_0099 + 741931-743835                                             29   2.8  
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999...    29   3.7  
08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012...    28   4.9  
11_01_0634 - 5085037-5085296,5085393-5085995,5087253-5087406,508...    28   6.5  
06_02_0225 + 13257655-13260693                                         28   6.5  
06_03_0808 - 24799383-24801275                                         27   8.5  
01_05_0373 - 21551674-21552867                                         27   8.5  
01_01_0591 - 4401847-4402063,4402860-4403002,4403339-4403447,440...    27   8.5  

>02_05_1050 -
           33757432-33757664,33757767-33758645,33758720-33759109,
           33759488-33759613,33760497-33760557
          Length = 562

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 403 SVPRLREFHSTASSFWLPTTQNMLWYTVAETSTAPETN 516
           SV R+R  H  ASS W P TQ ++     + ++ P TN
Sbjct: 133 SVTRVRTPHKVASSAWKPLTQPIVMSEDLKRASVPSTN 170


>07_01_0099 + 741931-743835
          Length = 634

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +1

Query: 205 NLNAFSGTWHEVARFPSTCKMASVQQRTTQSEARIHSVSYKVLSGPKDNSQLRYRPQQYL 384
           N+ A  G W EVAR  S  K + +Q+    S   +    Y+ ++G  D S  R   + Y 
Sbjct: 473 NIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAG--DMSHPR-TDEIYA 529

Query: 385 LMEEESSV 408
           ++E+ + +
Sbjct: 530 MLEKMNGI 537


>01_06_0116 -
           26595570-26596607,26596964-26598353,26599386-26599923,
           26600562-26601453
          Length = 1285

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 446 NEDAVEWNSRNRGTDDSSSISRYCCGRYRS 357
           +ED  +W + NR  DD  ++SRY   + RS
Sbjct: 322 SEDKDKWPAENRDGDDRKTLSRYDHSKVRS 351


>08_02_0805 +
           21400345-21400701,21400797-21400975,21401223-21401271,
           21401310-21401390,21401988-21402605
          Length = 427

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 184 VQAVPNFNLNAFSGTWHEVARFPS 255
           ++ V N +L  + G W+E+A FPS
Sbjct: 1   MKVVRNLDLERYMGRWYEIACFPS 24


>11_01_0634 -
           5085037-5085296,5085393-5085995,5087253-5087406,
           5087510-5087671,5087789-5088676
          Length = 688

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +3

Query: 402 ISATIAGVPFNSIFVLATDYTEYALVYSCRNIDSARNKSTAGNSAEHAVDSPQLLTTL 575
           +S +I+ +P   +F+ + D + +   YSCR   ++R  +         + SP+ L +L
Sbjct: 414 LSGSISSLPLPIVFLRSGDSSVHPHTYSCRRAVASREAADGDPERPLLLVSPRYLRSL 471


>06_02_0225 + 13257655-13260693
          Length = 1012

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 436 LLNGTPAIVALMTPLPL-AGTVADGIEVVNC 347
           +LNG P    LM   PL A TVA+ + V++C
Sbjct: 665 VLNGRPPGALLMPRPPLDAATVAESVSVISC 695


>06_03_0808 - 24799383-24801275
          Length = 630

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 436 LLNGTPAIVALMTPLPLAGTVADGIEVV 353
           LLN TP+ VA    +PLA +  DG +++
Sbjct: 74  LLNATPSAVAAANSVPLAVSPVDGTQLL 101


>01_05_0373 - 21551674-21552867
          Length = 397

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 425 SIQQHLRFGYRLHRICSGIQLQKHRQRQ 508
           SI QH+ +GY   RI +GI    HRQR+
Sbjct: 344 SITQHVPYGYDYMRIRTGID-DYHRQRK 370


>01_01_0591 -
           4401847-4402063,4402860-4403002,4403339-4403447,
           4403546-4404707,4405754-4405865,4405980-4406015
          Length = 592

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 506 GAVDVSATVYQSIFCVV 456
           GAV VS +VYQ++FC V
Sbjct: 379 GAVSVSMSVYQTMFCFV 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,549,124
Number of Sequences: 37544
Number of extensions: 365213
Number of successful extensions: 977
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)