Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0421
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        31   0.53 
SB_58628| Best HMM Match : Tenui_NCP (HMM E-Value=4.5)                 31   0.70 
SB_32248| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   2.1  
SB_12550| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)             29   3.7  
SB_32401| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-10)               29   3.7  
SB_9080| Best HMM Match : zf-CXXC (HMM E-Value=2)                      29   3.7  
SB_57999| Best HMM Match : DUF512 (HMM E-Value=1.2)                    28   4.9  
SB_2045| Best HMM Match : EGF (HMM E-Value=0)                          28   4.9  
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)                28   6.5  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         27   8.6  

>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 302  PEFIQCRTKYCQDRKTIHNFDTVRNSTC*WKRSHQCHDC 418
            P F+  +T  C D+  + N+   ++ TC W  S +C  C
Sbjct: 1386 PNFLNQQTNKCVDKCPLGNYGNTKSRTC-WPCSSKCQTC 1423


>SB_58628| Best HMM Match : Tenui_NCP (HMM E-Value=4.5)
          Length = 479

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -1

Query: 521 CRFVSGAVDVSATVYQSI 468
           CRFV GA D+SA VYQ I
Sbjct: 173 CRFVGGAQDISAGVYQEI 190


>SB_32248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -1

Query: 521 CRFVSGAVDVSATVYQSI 468
           CRFV GA D+SA VYQ I
Sbjct: 173 CRFVGGAQDISAGVYQEI 190


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = -3

Query: 228 RARERIQVEVRNG--LNLIFGNT-LPSKNDVATEIVRVIET 115
           R ++ +  EV+N    N+I  +  +PSKND+AT  + V++T
Sbjct: 296 RTKQNLDFEVKNSYTFNVIASDGGVPSKNDLATVTINVLDT 336


>SB_12550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 850

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +3

Query: 147 RHS*RAVCCRKSSSGRSELQPECVLWHVA*GGQIPVNLQNGQCAATDYTVRSQNSFSVV 323
           +H   +V   ++ S   +  P C+L  V  GG+     +NG+C+A+ + +  +  FS +
Sbjct: 739 QHKRYSVLIAENPSPFGDRAPSCILSRVVPGGE----RRNGRCSASVFAITERRGFSAM 793


>SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)
          Length = 1220

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = -1

Query: 545 RVFC*VSSCRFVSGA--VDVSATVYQSIF-CVVGSQNEDAVEWNSRNRGTDDSSSISRYC 375
           R+ C + SCR VSGA    V++ V +++F C   + N   ++   RN    + S   R  
Sbjct: 682 RILCNLYSCRVVSGARIARVASAVLEAVFRCESPTPNGAKIK---RNAAMAEISDPLRPS 738

Query: 374 CGRYRSCELSFGPDNTLYDTE 312
              YRS   +        DTE
Sbjct: 739 MRDYRSTSSNSDQPEVFLDTE 759


>SB_32401| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-10)
          Length = 269

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 39/153 (25%), Positives = 59/153 (38%), Gaps = 12/153 (7%)
 Frame = +1

Query: 166 CVAENQVQAVPNFNLNAFSGTWHEVARFPSTCKMASVQQRTTQSEAR-IHSVSYKVLS-G 339
           C  E  V  V + N+   S     + R       ++VQ   T S+A  I +V   + S G
Sbjct: 31  CKVEKSVTQVTSTNVKDGSSRNENIVRSDVQVPTSNVQITMTSSQALPIKAVPQSIASSG 90

Query: 340 PKDNSQ--LRY------RPQQ--YLLMEEESSVPRLREFHSTASSFWLPTTQNMLWYTVA 489
            K N+   +R       RP Q  Y++      +P L           +P  +     T+A
Sbjct: 91  TKVNTSSIIRQHNDKNNRPPQKVYIMRSSLDKLPNLATASQPVLLKIIPAPK-----TIA 145

Query: 490 ETSTAPETNLQLETQQNTRWTLRSC*QRYQYRS 588
            +ST      Q+ET   T    +SC   Y+Y S
Sbjct: 146 PSSTDVTMVTQMETSNGTGNASKSCESSYRYES 178


>SB_9080| Best HMM Match : zf-CXXC (HMM E-Value=2)
          Length = 390

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +2

Query: 275 CSNGLHSPKPEFIQCRTKYCQDRKTIHNFDTVRNSTC*W---KRSHQCHDCGSSIQQH 439
           C+ G  +P+   ++  T +   RK   + D+ R  T  W   +R HQC  CG  +  H
Sbjct: 46  CNKGYSNPRHRCLRECTCFENHRKVKSHPDS-RGKTVRWSYCQRYHQCTACGEVLNMH 102


>SB_57999| Best HMM Match : DUF512 (HMM E-Value=1.2)
          Length = 247

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = +3

Query: 291 TVRSQNSFSVVQSIVRTERQFTTSIPSATVPANGRGVISATIAGVPFNSIFVLATDYTEY 470
           + R +N  + V++I  ++  +  S P   +    R  +SA   G+ F   ++        
Sbjct: 51  SARKRNEIAAVKTIGLSQVVYFASYPYCAILFGPRTTLSARTPGLDFLRSYLFLPTVLLT 110

Query: 471 ALVYSCR 491
            L+Y+CR
Sbjct: 111 QLIYACR 117


>SB_2045| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1101

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 212 MRSLARGMRWPDSRQPAKWPVCSNGLHSPKPEFIQCRTKYCQDRKT 349
           + S  R +++PDS  PA+  V + GL+  K   IQ     C  R T
Sbjct: 11  LSSFQRFLKYPDSLDPARVSVWTEGLNVSKSIRIQTNPCKCGRRLT 56


>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
          Length = 1420

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = +1

Query: 79  DYFIDRGHNE-RGCFYYPDNFGGDVILRGQCVAENQVQAVPNFNLNAFSGT 228
           DYF D  H+    C   P +        G C+ EN V   PN  L  F GT
Sbjct: 754 DYFHDDFHDHILYCTSAPTSLEDFKWGGGPCLGENGVPVNPNIALGGFEGT 804


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 257 PAKWPVCSNGLHSPKPEFIQCRTKYCQD 340
           P KW        + K EF+ C TKY QD
Sbjct: 147 PPKWDGRRRSYATWKKEFLHCMTKYNQD 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,180,037
Number of Sequences: 59808
Number of extensions: 441497
Number of successful extensions: 1474
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)