Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0421
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-12|CAJ76949.1|  622|Caenorhabditis elegans Hypothetical...    29   3.3  
AL021492-11|CAA16378.1|  684|Caenorhabditis elegans Hypothetical...    29   3.3  
AL132952-13|CAB61154.2|  283|Caenorhabditis elegans Hypothetical...    28   5.8  
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>AL021492-12|CAJ76949.1|  622|Caenorhabditis elegans Hypothetical
           protein Y45F10D.3b protein.
          Length = 622

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 407 CHDCGSSIQQHLRFGYRLHRICSGIQLQKHRQRQKQIY 520
           C DC +S+ +     +  H +  G QL K+R  QKQIY
Sbjct: 532 CFDCSTSVDKAPVILFDCHSM-KGNQLFKYRVAQKQIY 568


>AL021492-11|CAA16378.1|  684|Caenorhabditis elegans Hypothetical
           protein Y45F10D.3a protein.
          Length = 684

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 407 CHDCGSSIQQHLRFGYRLHRICSGIQLQKHRQRQKQIY 520
           C DC +S+ +     +  H +  G QL K+R  QKQIY
Sbjct: 594 CFDCSTSVDKAPVILFDCHSM-KGNQLFKYRVAQKQIY 630


>AL132952-13|CAB61154.2|  283|Caenorhabditis elegans Hypothetical
           protein Y51H4A.22 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 223 GTWHEVARFPSTCKMASVQQRTTQSEARIH-SVSYKVLSGPKDNSQLRYRPQQYLLMEEE 399
           G+  ++  F  +  +A    +  + +  +H SV YKV   PKD  Q+ ++ +Q    +E+
Sbjct: 108 GSNEKLNSFKYSLYVAHESLKMKKIDDSVHDSVQYKVKDTPKDTLQVVFKFEQTTKKDEK 167

Query: 400 SSV 408
           S+V
Sbjct: 168 STV 170


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 20/97 (20%), Positives = 33/97 (34%)
 Frame = +2

Query: 95  EGTMSAAVSITLTISVATSFLEGSVLPKIKFRPFRTST*MRSLARGMRWPDSRQPAKWPV 274
           +    A V+ T    V T  LE SV    +  P    +  +   +  +      PA    
Sbjct: 325 QSACQAPVATTAAPQVVTIILEASVSQSAQCEPQCQQSCQQQCVQQQQPMQQCAPACTQS 384

Query: 275 CSNGLHSPKPEFIQCRTKYCQDRKTIHNFDTVRNSTC 385
           CS    + +P  + C+T+         N+    N  C
Sbjct: 385 CSQSCSAAQPAQMPCQTQSVNSCSCQQNYSPCGNGQC 421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,948,141
Number of Sequences: 27780
Number of extensions: 315343
Number of successful extensions: 1012
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)