Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0421
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.74 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.1  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +1

Query: 271 SVQQRTTQSEARIHSVSYKVLSGPKDNSQLRYRPQQYLLMEEESSVPRLREFHSTASSFW 450
           +V + +TQS     +VSY   +   +NSQL+  P+  L+        RL    +      
Sbjct: 708 NVPKESTQSLTTTGNVSYLTTNNTSNNSQLQI-PRASLVSTTSVKSLRLEGDETPPYGME 766

Query: 451 LPTTQNMLWYT-VAETSTAPE 510
           L   ++   YT +A  +TA E
Sbjct: 767 LTEAEHYALYTAMAPHATASE 787


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 249 ESGHLMPRARERIQVEVRNGLNLIFGNTLPSKND 148
           +SG+L+    ++I +    GLN++ GN +   +D
Sbjct: 341 DSGYLIDEYGKKIDIYTPEGLNML-GNVIEGSSD 373


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 404  DDSSSISRYCCGRYRSCELSFGPD 333
            D+SSS S Y    Y+S E S  PD
Sbjct: 951  DESSSSSFYSSFLYKSSESSCNPD 974


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 67  VLRQDYFIDRGHNERGCFYYPDNFGGDVILRG 162
           +L  D+F D     +  F+YPD       L G
Sbjct: 335 LLIYDFFKDSSFRIQHHFFYPDPLASKYELHG 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,797
Number of Sequences: 438
Number of extensions: 3503
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)