Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0421
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45770.1 68418.m05627 leucine-rich repeat family protein cont...    30   1.3  
At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containi...    29   1.8  
At5g58070.1 68418.m07267 lipocalin, putative similar to temperat...    29   1.8  
At5g13450.1 68418.m01548 ATP synthase delta chain, mitochondrial...    29   1.8  
At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family...    29   3.1  
At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family...    28   5.4  
At4g04404.1 68417.m00636 zinc finger (C2H2 type) family protein ...    27   7.1  
At3g19370.1 68416.m02457 expressed protein                             27   7.1  
At2g35800.1 68415.m04396 mitochondrial substrate carrier family ...    27   7.1  
At3g16980.1 68416.m02169 DNA-directed RNA polymerase II, putativ...    27   9.4  
At1g50630.1 68414.m05690 expressed protein                             27   9.4  

>At5g45770.1 68418.m05627 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 425

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +3

Query: 249 PVNLQNGQCAATDYTVRSQNSFSVVQSIVRTERQFTTSIPSATVPANGRGVISATIAGVP 428
           P N  N Q +++  T    + +  + SI  T    T S+PS T+    + +IS +    P
Sbjct: 48  PCNNNNNQSSSSSITCDDASPYRHITSISFTNCSSTLSLPSKTLKPLSKSLISLSFTNCP 107


>At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 620

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +1

Query: 118 FYYPDNFGGDVILRGQCVAENQVQAVPNFNLNAFSGTWHEVARFPS---TCKMASVQQRT 288
           F  PD F  ++++RG   ++   +++  +     S   H    FPS    C   S  + T
Sbjct: 75  FDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEET 134

Query: 289 TQSEARIHSVSYK 327
           TQ  A+I  + Y+
Sbjct: 135 TQIHAQITKLGYE 147


>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
           stress-induced lipocalin [Triticum aestivum] GI:18650668
          Length = 186

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 175 ENQVQAVPNFNLNAFSGTWHEVARFPS 255
           + +++ V   N+  + G W+E+A FPS
Sbjct: 4   KKEMEVVKGLNVERYMGRWYEIASFPS 30


>At5g13450.1 68418.m01548 ATP synthase delta chain, mitochondrial,
           putative / H(+)-transporting two-sector ATPase, delta
           (OSCP) subunit, putative identical to SP|Q96251; similar
           to SP|P22778 ATP synthase delta chain, mitochondrial
           precursor (EC 3.6.3.14) (Oligomycin sensitivity
           conferral protein) (OSCP) {Ipomoea batatas}; contains
           Pfam profile PF00213: ATP synthase F1, delta subunit
          Length = 238

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 291 TVRSQNSFSVVQSIVRTERQFTTSI--PSATVPANGRGVISATIAGVPFNSIFVLATDYT 464
           +VRS++ F  +++      Q T ++  P A V  NG       IA V  NS+  + TD +
Sbjct: 23  SVRSKSLFPALRTYATASAQTTANVKVPIALVGENGNFASWLYIAAVKMNSLEKIETDLS 82

Query: 465 E 467
           E
Sbjct: 83  E 83


>At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family
           protein low similarity to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 488

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -3

Query: 234 MPRARERIQVEVRNGLNLIFGNTLPSKNDVATEIVRVIETAALIVPS 94
           +PR  + +++    G++++  N    + DVA+  V++ ET  +IV S
Sbjct: 58  IPRIEKSMKIPFLGGIDVVVSNLTIYELDVASSYVKLGETGVVIVAS 104


>At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family
           protein
          Length = 571

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +1

Query: 340 PKDNSQLRYRPQQYLLMEEESSVPRLREFHSTASSFWLPTTQNMLWYTVAETSTAP 507
           P +NS +  + +   LMEE +S+P  + F S  +S  + TT ++   T ++ + AP
Sbjct: 250 PVENSNVEVK-RVSSLMEEMASIPASKLFSSPITSTPVKTTSSLAKPTSSQINIAP 304


>At4g04404.1 68417.m00636 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 230

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 392 KRSHQCHDCGSSIQQHLRFG--YRLHRICSGIQLQKHRQRQK 511
           K SH+C  CG S + +   G   RLHR   G +L + R+  K
Sbjct: 88  KSSHRCQICGKSFECYQALGGHRRLHRPIKG-KLARKREYYK 128


>At3g19370.1 68416.m02457 expressed protein 
          Length = 704

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/67 (28%), Positives = 35/67 (52%)
 Frame = +1

Query: 271 SVQQRTTQSEARIHSVSYKVLSGPKDNSQLRYRPQQYLLMEEESSVPRLREFHSTASSFW 450
           S+Q+R  Q E+   ++  ++ S  K+N+ LRY   +Y ++E++  V +  E   T  S  
Sbjct: 175 SLQERKFQVESEFEALMTRLDSTEKENAFLRY---EYTVLEKDLQV-KTEETEHTRRSME 230

Query: 451 LPTTQNM 471
           L   Q +
Sbjct: 231 LTHKQQL 237


>At2g35800.1 68415.m04396 mitochondrial substrate carrier family
           protein contains INTERPRO:IPR001993 Mitochondrial
           substrate carrier family, INTERPRO:IPR002048
           calcium-binding EF-hand domain
          Length = 823

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/27 (66%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +3

Query: 510 NKSTAGNSAEHAVDSPQLLTT--LSIP 584
           N STAG   E AVDSPQ L T  LSIP
Sbjct: 301 NVSTAGKE-ESAVDSPQNLATGLLSIP 326


>At3g16980.1 68416.m02169 DNA-directed RNA polymerase II, putative
           similar to SP|P36958 DNA-directed RNA polymerase II 15.1
           kDa polypeptide (EC 2.7.7.6) {Drosophila melanogaster};
           contains Pfam profile PF02150: RNA polymerases M/15 Kd
           subunit
          Length = 114

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 432 NSIFVLATDYTEYALVYSCRNIDS---ARNKSTAGNSAEHAV-DSPQLLTTLS 578
           N+I     D  +  L+Y+CRN D    A N     N   H+V +  Q+LT ++
Sbjct: 11  NNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILTDVA 63


>At1g50630.1 68414.m05690 expressed protein
          Length = 453

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 490 LQLYTRAYSV*SVAKT-KMLLNGTPAIVALMTPLPLAGTVADGIEVVNCLSVLTILCTTL 314
           L + T+AY+  ++ +  ++ L     + AL+  L  A  +    + V CL+    +C TL
Sbjct: 276 LLITTKAYTEVNIYRAGELALCSMTLVTALLILLRSASKITHKAQAVTCLAAKWHVCATL 335

Query: 313 NEF 305
             F
Sbjct: 336 ESF 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,998,258
Number of Sequences: 28952
Number of extensions: 282601
Number of successful extensions: 849
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)