Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0420
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    29   0.42 
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    25   6.8  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   6.8  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    25   9.0  

>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 325 GYAI*NFNKIRVFSEFIESKTDNIVVQEDRYK 230
           G AI N N   +  ++IES+ DN++ +E R K
Sbjct: 123 GEAIDNENNFDIILQYIESQYDNVLEEESRIK 154


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 365 GGPSITGLPDHM*IPPPALSMKSKSQLHSNSNLKRXYP 478
           G P    L DH+ +    LS +  SQ+ +N +L + YP
Sbjct: 368 GDPDFLPL-DHLDVVSKLLSKEFASQIRNNISLSKTYP 404


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 404 IPPPALSMKSKSQLHSNSNLKRXYPPYDFSALRYPS 511
           IPP A++ + +   H ++N     PP   +AL   S
Sbjct: 102 IPPSAITSEDEDDYHGSANSSTVLPPRTENALHAAS 137


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 348 KIFNVASMVMLSEISIKSVYFPSLLSPRQIILWSKRTDIK 229
           ++F   + V+++       YF S    RQI+LW+   D+K
Sbjct: 45  QMFGHTAEVLVARFDPSGSYFASGGMDRQILLWNVFGDVK 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,726
Number of Sequences: 5004
Number of extensions: 53811
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)